Basic Information
Locus ID:
Ag1G01032
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 159013405 | 159022235 | - | Ag1G01032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 58,023.98 Da | 41.36 | 85.28 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 177 | 525 | 8.2E-50 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 174 | 526 | 8.83E-71 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 167 | 528 | 1.4E-81 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 177 | 528 | 40.088963 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 470 | 488 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 178 | 193 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30890.1 | ubiquitin-specific protease 24. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_017227661.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Daucus carota subsp. sativus] | 0 |
| Q9FPS3 | Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana OX=3702 GN=UBP24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166GXG1 | Ubiquitin carboxyl-terminal hydrolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.289291 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.796787 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.414753 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 25.972364 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 26.562935 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 24.967144 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 30.484163 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.039921 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.145044 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.753429 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.649954 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.344128 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.842039 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.835489 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.631232 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.577947 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.304645 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.865009 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.091793 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.219477 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.610525 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.476198 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.095921 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.24999 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.994705 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.616755 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.373058 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.841543 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.033669 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.883421 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.677725 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.327182 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.849791 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.89819 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.177685 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.366709 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.051253 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.625651 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.4842 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.836659 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.636125 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 28.955364 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.298409 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 23.693945 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.629705 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 39.639442 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.051119 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.566214 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.589769 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.155254 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16327, jg16328, jg29870, jg37704 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5125 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023581 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g005320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28927, Sbi_jg3009 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6880 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000931 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11845, Sgl15946, Sgl16896 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015301, gene:ENSEOMG00000034551 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0016070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30229490 |
| Apiaceae | Apium graveolens | 2 | Ag1G01032, Ag9G01493 |
| Arecaceae | Cocos nucifera | 3 | COCNU_16G002580, contig69624671G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695455, gene-LOC103714682, gene-LOC120109027 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1569.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G10199, Ftri16G34059 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g010790.2N, BniB05g006940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0831 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0844 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g00850, gene.Cymno03g13540 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0016s00029.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g32420, gene.Thate07g00420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.123 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00014393, Pov_00014858, Pov_00015642, Pov_00028635 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02290 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3970, BH03.4272, CH07.225 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213730, gene-QOZ80_3BG0258850 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0116440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_039044, gene-QYE76_039045 |
| Poaceae | Oryza coarctata | 2 | Oco13G014950, Oco14G015770 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g46660.1, LOC_Os11g34270.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G379100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305092, Pt_Chr0305143 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G020960, Chr0G021330, Chr19G000800, Chr24G013170 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G265100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG015650, gene_TRIDC2BG018810 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G127200.3, TraesCS2B02G149000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb110870_P001, Zm00001eb329890_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33182 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5725, Zma_g7014 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.192, evm.TU.LG04.560 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g33240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1439 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8519 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5641 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.160 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003201 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9501 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18808 |
| Salicaceae | Populus euphratica | 1 | populus_peu35111 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132643621, gene-LOC132644843 |
| Solanaceae | Solanum chilense | 2 | SOLCI005880000, SOLCI005923600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002891, gene-LOC107008165 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8541 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0394 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13400.v3.1 |