Basic Information
Locus ID:
Ag1G01028
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Integrator complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 158870569 | 158876813 | + | Ag1G01028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 110,940.51 Da | 43.91 | 108.07 | 0.12 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14590.1 | embryo defective 2739. | 0 |
| RefSeq | XP_017227735.1 | PREDICTED: integrator complex subunit 3 homolog [Daucus carota subsp. sativus] | 0 |
| Q5RE70 | Integrator complex subunit 3 OS=Pongo abelii OX=9601 GN=INTS3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BTJ0 | Ints3_N domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_022570 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.696328 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.610215 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.710612 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.575322 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.869629 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.174926 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.015197 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.319813 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.42918 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.051735 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.437048 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.827733 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.007537 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.491107 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.024364 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.324216 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.979022 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.875559 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.6031 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.687091 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.165238 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.900901 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.341595 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.165024 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.658226 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.093016 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.004121 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.272277 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.118012 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.496447 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.774016 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.78751 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.16162 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.633295 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.934716 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.033276 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.692857 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.47245 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.641044 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.970391 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.892751 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.945532 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.589429 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.96259 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.617742 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.422484 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.132556 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.275874 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.824226 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.018997 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15626, jg4026 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_11594, gene_5093, gene_5095, gene_9976 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005060 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17843, Sbi_jg62468 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1042 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007191, GOSA_00007198 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59164 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028608, gene:ENSEOMG00000029681 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0002090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30051110 |
| Apiaceae | Apium graveolens | 1 | Ag1G01028 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714943, gene-LOC120103817 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.728.V1.1, AsparagusV1_09.1319.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21228 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14590.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017599m.g.v1.0, Thhalv10027440m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g021850.2N, BniB08g074420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0935 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0934 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-396 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.151 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.422, BH04.454, CH04.447 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671340, gene-QOZ80_9BG0694820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064719 |
| Poaceae | Oryza coarctata | 2 | Oco21G002170, Oco22G003000 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g07030.1, LOC_Os11g40750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G078100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G020590, Chr16G010160, Chr17G009250, Chr31G001630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G176100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032800, gene_TRIDC4BG017020 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G206300.1.cds1, TraesCS4D02G107300.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb091720_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27144 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18472 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2469, evm.TU.LG17.1513 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g19850, gene.Posoc05g19860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1002 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19605, nbisL1-mrna-30014 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3511 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16366 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.255 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015263 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4501 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20793 |
| Salicaceae | Populus euphratica | 1 | populus_peu01765 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132601549 |
| Solanaceae | Solanum chilense | 1 | SOLCI002970700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021634 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6559 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1477 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11590.v3.1 |