halophFGD

Basic Information

Locus ID: Ag1G01020

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: rho GTPase-activating protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	157942056	157958392	+	Ag1G01020

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.32	96,377.07 Da	52.83	74.85	-0.65

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00821	PH	21	116	2.17211E-12	-
CDD	cd00159	RhoGAP	181	318	3.27699E-36	-
Pfam	PF00169	PH domain	20	124	8.5E-13	IPR001849
Pfam	PF14389	Leucine-zipper of ternary complex factor MIP1	614	694	3.7E-22	IPR025757
Pfam	PF00620	RhoGAP domain	181	325	3.4E-32	IPR000198
SUPERFAMILY	SSF48350	GTPase activation domain, GAP	181	375	2.35E-35	IPR008936
SUPERFAMILY	SSF50729	PH domain-like	16	132	3.29E-18	-
Gene3D	G3DSA:1.10.555.10	Rho GTPase activation protein	149	374	6.8E-44	IPR008936
Gene3D	G3DSA:2.30.29.30	-	9	126	1.7E-17	IPR011993
SMART	SM00324	RhoGAP_3	178	369	3.9E-30	IPR000198
SMART	SM00233	PH_update	19	127	2.0E-16	IPR001849
ProSiteProfiles	PS50003	PH domain profile.	18	125	15.7531	IPR001849
ProSiteProfiles	PS50238	Rho GTPase-activating proteins domain profile.	172	372	29.735861	IPR000198
MobiDBLite	mobidb-lite	consensus disorder prediction	535	567	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	747	765	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	745	765	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	849	870	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	535	574	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	407	434	-	-
Coils	Coil	Coil	824	844	-	-
Coils	Coil	Coil	604	638	-	-
Coils	Coil	Coil	663	697	-	-

Gene Ontology

Biological Process:

GO:0007165 (signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G19390.1	Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein.
RefSeq	XP_017226969.1	PREDICTED: rho GTPase-activating protein 7-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8RWQ4	Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1
TrEMBL	A0A175YGN6	Rho GTPase-activating protein 7-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029989 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	22.425516	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	17.492594	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	21.806831	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	21.777304	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	22.945938	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	21.734247	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	17.471043	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	18.583063	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	42.378044	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	45.769249	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	46.792793	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	39.671524	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	38.226681	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	36.849037	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	19.957602	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	23.051519	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	21.82184	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	30.344233	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	26.373007	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	26.160259	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	23.553757	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	29.856539	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	27.985712	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	24.184439	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.093779	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	33.984722	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	31.888983	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	25.464714	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	34.551613	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.727007		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8.688438		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.483699		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.463305		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	9.067004		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.054505		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.293393		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.664889		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.475233		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	34.385197	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	22.436533	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	17.614357	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.59989	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	20.966211	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	26.749228	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	33.966759	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.277247	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	34.610477	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	32.818138	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	31.265152	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	29.737841	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg10792, jg16216, jg16353, jg35607, jg6142, jg8522
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11774, gene_23365
Amaranthaceae	Atriplex hortensis	3	Ah005078, Ah012278, Ah023719
Amaranthaceae	Beta vulgaris	2	BVRB_1g007850, BVRB_4g073750
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17790, Sbi_jg4168, Sbi_jg49634, Sbi_jg62450
Amaranthaceae	Salicornia europaea	2	Seu_jg1024, Seu_jg5615
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001020, GOSA_00007213
Amaranthaceae	Suaeda glauca	2	Sgl10570, Sgl61679
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000010800, gene:ENSEOMG00000013959 ... gene:ENSEOMG00000026994, gene:ENSEOMG00000040372
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0010740, CQ.Regalona.r1.1BG0015060 ... CQ.Regalona.r1.4AG0002250, CQ.Regalona.r1.4BG0002330
Anacardiaceae	Pistacia vera	2	pistato.v30041760, pistato.v30050660
Apiaceae	Apium graveolens	3	Ag1G01020, Ag2G00498, Ag9G01469
Arecaceae	Cocos nucifera	2	COCNU_02G017870, COCNU_16G001940
Arecaceae	Phoenix dactylifera	4	gene-LOC103695721, gene-LOC103701658, gene-LOC103716927 ... gene-LOC120111581
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1554.V1.1, AsparagusV1_05.61.V1.1 ... AsparagusV1_07.1656.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G10531, Ftri16G19225, Ftri17G12387, Ftri18G02868 ... Ftri2G10438, Ftri6G00381
Brassicaceae	Arabidopsis thaliana	3	AT4G24580.1, AT5G12150.1, AT5G19390.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10012649m.g.v1.0, Thhalv10012698m.g.v1.0 ... Thhalv10024336m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g25020.v2.2, Sp6g31480.v2.2, Sp7g22580.v2.2
Brassicaceae	Brassica nigra	6	BniB02g043320.2N, BniB02g049950.2N, BniB02g081270.2N ... BniB03g013070.2N, BniB05g012620.2N, BniB05g044290.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1219, Ceq05G1615
Casuarinaceae	Casuarina glauca	2	Cgl03G1323, Cgl05G1611
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g05610, gene.Cymno09g01250, gene.Cymno11g10110
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g07490, gene.Thate06g22020
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-12393, nbisL1-mrna-8782
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.1580, evm.TU.LG09.125
Plantaginaceae	Plantago ovata	3	Pov_00017200, Pov_00027423, Pov_00037198
Plumbaginaceae	Limonium bicolor	4	Lb3G15599, Lb3G15600, Lb3G15601, Lb6G31384
Poaceae	Echinochloa crus-galli	12	AH01.3596, AH01.4299, AH03.3949, AH06.31, BH01.3943, BH06.28 ... BH01.4604, BH03.4248, CH01.4207, CH01.4915, CH06.25, CH07.250
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_3AG0248760, gene-QOZ80_3BG0279500 ... gene-QOZ80_3BG0286460, gene-QOZ80_6AG0505710, gene-QOZ80_6BG0457750, gene-QOZ80_7AG0580160, gene-QOZ80_7BG0611260
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0117090.1, HORVU.MOREX.r3.4HG0372920.1 ... HORVU.MOREX.r3.4HG0390910.1
Poaceae	Lolium multiflorum	5	gene-QYE76_008107, gene-QYE76_039096, gene-QYE76_067737 ... gene-QYE76_067785, gene-QYE76_069178
Poaceae	Oryza coarctata	6	Oco05G008570, Oco05G013820, Oco06G008890, Oco06G012530 ... Oco13G014760, Oco14G015580
Poaceae	Oryza sativa	4	LOC_Os03g11140.1, LOC_Os03g15180.1, LOC_Os03g24180.1 ... LOC_Os07g46450.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G350500, gene-BS78_01G412700 ... gene-BS78_02G370000, gene-BS78_10G002900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102111, Pt_Chr0102140, Pt_Chr0102745, Pt_Chr0305060
Poaceae	Sporobolus alterniflorus	9	Chr01G034960, Chr04G011620, Chr07G011030, Chr10G001070 ... Chr12G004650, Chr14G000100, Chr14G000440, Chr19G000910, Chr27G016520
Poaceae	Thinopyrum elongatum	3	Tel2E01G271600, Tel4E01G289600, Tel4E01G383000
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG016170, gene_TRIDC2BG019470 ... gene_TRIDC4AG011490, gene_TRIDC4AG025330, gene_TRIDC4BG027380, gene_TRIDC4BG038860
Poaceae	Triticum aestivum	9	TraesCS2A02G131400.3, TraesCS2B02G153800.3 ... TraesCS2D02G133500.2, TraesCS4A02G084500.1, TraesCS4A02G163400.1, TraesCS4B02G153200.1, TraesCS4B02G219700.1, TraesCS4D02G163800.1, TraesCS4D02G220100.1
Poaceae	Zea mays	8	Zm00001eb011160_P001, Zm00001eb017310_P001 ... Zm00001eb110720_P002, Zm00001eb222720_P001, Zm00001eb268580_P001, Zm00001eb329690_P003, Zm00001eb379420_P001, Zm00001eb398340_P001
Poaceae	Zoysia japonica	4	nbis-gene-1544, nbis-gene-3267, nbis-gene-51235 ... nbis-gene-53447
Poaceae	Zoysia macrostachya	5	Zma_g1181, Zma_g28959, Zma_g31212, Zma_g3617, Zma_g5711
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.1884, evm.TU.LG06.470, evm.TU.LG08.1425 ... evm.TU.LG18.1688, evm.TU.LG20.196, evm.TU.LG22.321
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13630, gene.Posoc08g04230
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.80, evm.TU.Scaffold_13_RagTag.984 ... evm.TU.Scaffold_7_RagTag.933, evm.TU.Scaffold_8_RagTag.809, evm.TU.Scaffold_8_RagTag.810
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-19397, nbisL1-mrna-24720, nbisL1-mrna-9429
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-15707, nbisL1-mrna-18063, nbisL1-mrna-20611 ... nbisL1-mrna-4915
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16345, nbisL1-mrna-19388, nbisL1-mrna-20535 ... nbisL1-mrna-6761
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.711, evm.TU.utg000002l.712 ... evm.TU.utg000015l.585, evm.TU.utg000018l.479, evm.TU.utg000027l.524
Rhizophoraceae	Kandelia obovata	3	Maker00003117, Maker00015901, Maker00018181
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11507, nbisL1-mrna-13051, nbisL1-mrna-4491 ... nbisL1-mrna-5473
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10178, nbisL1-mrna-11618, nbisL1-mrna-17031 ... nbisL1-mrna-20810
Salicaceae	Populus euphratica	5	populus_peu01790, populus_peu11981, populus_peu14556 ... populus_peu32194, populus_peu36029
Solanaceae	Lycium barbarum	4	gene-LOC132619321, gene-LOC132626383, gene-LOC132627612 ... gene-LOC132643649
Solanaceae	Solanum chilense	3	SOLCI001222600, SOLCI002313900, SOLCI003459600
Solanaceae	Solanum pennellii	3	gene-LOC107004985, gene-LOC107006844, gene-LOC107018168
Tamaricaceae	Reaumuria soongarica	3	gene_15073, gene_5833, gene_9604
Tamaricaceae	Tamarix chinensis	3	TC02G2930, TC03G3003, TC09G2514
Zosteraceae	Zostera marina	3	Zosma01g10370.v3.1, Zosma03g17740.v3.1, Zosma06g13270.v3.1