Basic Information
Locus ID:
Ag1G00997
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UBC20
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 156047985 | 156049614 | - | Ag1G00997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 20,029.49 Da | 55.45 | 78.31 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 37 | 174 | 5.07692E-66 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 38 | 172 | 3.2E-47 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 33 | 174 | 2.28E-53 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 27 | 177 | 1.4E-57 | IPR016135 |
| SMART | SM00212 | ubc_7 | 37 | 176 | 9.8E-60 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 34 | 178 | 49.098206 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 107 | 122 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50490.1 | ubiquitin-conjugating enzyme 20. Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells. | 0 |
| RefSeq | XP_017224475.1 | PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Daucus carota subsp. sativus] | 0 |
| Q8L7T3 | Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana OX=3702 GN=UBC20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YGV0 | UBC core domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.526917 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.695799 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.71414 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.041199 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.875988 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.718806 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.76406 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.274383 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 148.35704 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 124.944633 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 136.75267 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 123.225594 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 88.029213 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 101.776688 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.153502 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.001021 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 46.840778 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.340006 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.201496 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.659232 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.333168 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 103.678017 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 95.023369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 134.813766 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 100.818916 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 38.306667 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 50.024006 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 39.87199 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.419373 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.680876 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.275665 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.093647 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.63356 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 154.972595 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.306983 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.025716 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.593564 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.597416 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 104.171974 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.245132 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.131391 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.81913 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.534421 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.798018 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.183976 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.366404 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.035756 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 149.6707 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 157.301102 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 134.70816 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16581, jg35591, jg8537 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9992 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030216 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17864, Sbi_jg62487 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1064 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007168 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59182 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008849, gene:ENSEOMG00000029842 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001940, CQ.Regalona.r1.4BG0002020 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30049760, pistato.v30051440, pistato.v30171280 |
| Apiaceae | Apium graveolens | 2 | Ag10G00589, Ag1G00997 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G008260, COCNU_16G002540 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103705660, gene-LOC103714675, gene-LOC103718125 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.247.V1.1, AsparagusV1_04.2039.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G07158, Ftri6G27517 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G50490.1, AT3G20060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011743m.g.v1.0, Thhalv10021614m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g37330.v2.2, Sp3g18090.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g043800.2N, BniB01g043830.2N, BniB04g059950.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1666 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1659 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno04g16430, gene.Cymno05g12630, gene.Cymno05g15550 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g29960, gene.Thate05g01050 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7353 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.Contig13.11, evm.TU.LG02.1446, evm.TU.LG09.176 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017251 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15684 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3296, BH07.3116, CH07.3184 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0004160, gene-QOZ80_1BG0052570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0256380.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052367 |
| Poaceae | Oryza coarctata | 1 | Oco02G008010 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g16650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G117100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603780, Pt_Chr0603861 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G026940, Chr03G001310, Chr05G004650, Chr08G003830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G321700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG025950, gene_TRIDC3BG029680 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G186500.1, TraesCS3B02G216000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb128530_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32521 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7346, Zma_g9679 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.198, evm.TU.LG08.1749, evm.TU.LG09.1437 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g26840, gene.Posoc01g36410 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.47, evm.TU.Scaffold_13_RagTag.1015 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24748, nbisL1-mrna-26107, nbisL1-mrna-30000 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19168, nbisL1-mrna-20449, nbisL1-mrna-3522 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16379, nbisL1-mrna-19362, nbisL1-mrna-4451 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.900, evm.TU.utg000015l.607 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000488, Maker00015818, Maker00017990 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-18528, nbisL1-mrna-2151, nbisL1-mrna-5455 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11592, nbisL1-mrna-20780, nbisL1-mrna-9539 |
| Salicaceae | Populus euphratica | 3 | populus_peu01967, populus_peu06291, populus_peu20123 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643623 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003167 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.131_chr01_-, gene_17139 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G1280, TC02G1676, TC07G1491 |
| Zosteraceae | Zostera marina | 2 | Zosma02g17470.v3.1, Zosma03g30700.v3.1 |