Basic Information
Locus ID:
Ag1G00952
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 150886060 | 150890260 | - | Ag1G00952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 48,374.81 Da | 73.24 | 56.86 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 301 | 331 | 4.13917E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 272 | 332 | 3.08E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 333 | 1.5E-9 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 273 | 332 | 10.276328 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 137 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017226845.1 | PREDICTED: uncharacterized protein LOC108202815 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YD10 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028968 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.56233 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.80444 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.008547 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.240791 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.038525 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.445383 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.647226 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.109901 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.124025 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.166248 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.084827 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.568153 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.229139 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.307453 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.549548 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.277258 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.404895 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.840012 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.482803 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.559082 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.699011 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.617769 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.137939 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.172635 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.166229 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.629969 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.125004 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.458191 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.16411 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.274518 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.455753 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.57799 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 28.162241 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.443703 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 28.861042 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.218859 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.287995 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.718082 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.80241 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.477185 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.77356 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.363594 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.158194 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.74658 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.421688 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.982742 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.71682 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.471527 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.852648 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.456305 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26194, jg28780, jg30314, jg970 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1213, gene_26457 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010203, Ah023455 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g006880, BVRB_9g217060 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg11289, Sbi_jg11290, Sbi_jg12401, Sbi_jg28785 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20272, Seu_jg6744 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000036, GOSA_00022477 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl11581, Sgl16951, Sgl17078, Sgl56043, Sgl61377, Sgl61613 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000012860, gene:ENSEOMG00000016089 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0008750, CQ.Regalona.r1.1BG0017120 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30046910, pistato.v30115190 |
| Apiaceae | Apium graveolens | 2 | Ag1G00952, Ag9G00078 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010660, COCNU_13G000590 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703762, gene-LOC103711556, gene-LOC120112380 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2694.V1.1, AsparagusV1_05.2747.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G33109, Ftri4G27838, Ftri8G21160 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G19680.1, AT1G75400.1, AT2G21500.2, AT4G39140.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000174m.g.v1.0, Thhalv10018531m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g00660.v2.2, Sp5g30540.v2.2, Sp7g36680.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g017280.2N, BniB03g015370.2N, BniB03g053910.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0990, Ceq07G1554 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1074, Cgl07G1651 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g08560 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g35480, gene.Thate03g00340 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1337, nbisL1-mrna-3114 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007488 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G07331, Lb2G13483, Lb3G17332, Lb7G32798 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.949, AH02.950, BH02.1173, BH02.1174, CH02.1294 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0004830, gene-QOZ80_1AG0004840 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0254560.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_052314, gene-QYE76_052318 |
| Poaceae | Oryza coarctata | 3 | Oco01G007130, Oco02G007410, Oco02G007420 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g15630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G108400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0603893, Pt_Chr0603915, Pt_Chr0603918 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G026400, Chr02G026410, Chr03G001790, Chr03G001800 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G311800, Tel3E01G312000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG024590, gene_TRIDC3AG024620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G176600.1, TraesCS3A02G176900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb127990_P001, Zm00001eb333340_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32462, nbis-gene-7309 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g7389, Zma_g9723, Zma_g9724 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.335, evm.TU.LG08.1789, evm.TU.LG09.1587 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g03510 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_1_RagTag.2249, evm.TU.Scaffold_1_RagTag.2250 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5023, nbisL1-mrna-9053 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14076, nbisL1-mrna-17454, nbisL1-mrna-9926 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-15356, nbisL1-mrna-3301, nbisL1-mrna-9435 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.1123, evm.TU.utg000016l.112 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003435, Maker00005303, Maker00016864 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-13335, nbisL1-mrna-14770, nbisL1-mrna-4672 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11144, nbisL1-mrna-1228, nbisL1-mrna-22394 |
| Salicaceae | Populus euphratica | 4 | populus_peu08840, populus_peu15264, populus_peu32921 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599195, gene-LOC132606579 |
| Solanaceae | Solanum chilense | 2 | SOLCI001818500, SOLCI007335400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002711, gene-LOC107008499 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11470_chr02_+, STRG.18484_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0438, TC12G1006 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06580.v3.1 |