halophFGD

Basic Information

Locus ID: Ag1G00942

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: phosphoribosylaminoimidazole carboxylase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	149616043	149623278	+	Ag1G00942

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.24	68,212.57 Da	39.54	92.32	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF17769	Phosphoribosylaminoimidazole carboxylase C-terminal domain	386	448	1.8E-18	IPR040686
Pfam	PF00731	AIR carboxylase	468	614	2.5E-65	IPR000031
Pfam	PF02222	ATP-grasp domain	188	359	1.6E-57	IPR003135
SUPERFAMILY	SSF56059	Glutathione synthetase ATP-binding domain-like	179	379	5.13E-59	-
SUPERFAMILY	SSF51246	Rudiment single hybrid motif	384	454	1.26E-15	IPR011054
SUPERFAMILY	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)	468	632	2.09E-66	-
SUPERFAMILY	SSF52440	PreATP-grasp domain	81	176	9.64E-28	IPR016185
Gene3D	G3DSA:3.30.470.20	-	261	454	1.9E-77	-
Gene3D	G3DSA:3.30.1490.20	-	189	258	5.4E-24	IPR013815
Gene3D	G3DSA:3.40.50.1970	-	455	634	2.1E-77	-
Gene3D	G3DSA:3.40.50.20	-	72	187	3.8E-41	-
SMART	SM01001	AIRC_2	467	616	1.9E-97	IPR000031
TIGRFAM	TIGR01161	purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit	83	443	1.2E-124	IPR005875
TIGRFAM	TIGR01162	purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit	469	623	3.6E-66	IPR000031
PIRSF	PIRSF001340	AIRC	77	634	1.7E-285	IPR016301
ProSiteProfiles	PS50975	ATP-grasp fold profile.	184	372	42.305046	IPR011761
Hamap	MF_01928	N5-carboxyaminoimidazole ribonucleotide synthase [purK].	82	443	40.338024	IPR005875
Hamap	MF_01929	N5-carboxyaminoimidazole ribonucleotide mutase [purE].	469	620	33.317371	IPR033747

Gene Ontology

Biological Process:

GO:0006189 ('de novo' IMP biosynthetic process)

Molecular Function:

GO:0004638 (phosphoribosylaminoimidazole carboxylase activity) GO:0005524 (ATP binding) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K11808 (phosphoribosylaminoimidazole carboxylase [EC:4.1.1.21])

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00048 (De novo purine biosynthesis, PRPP + glutamine => IMP)

Reaction:

R04209 (1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate <=> Aminoimidazole ribotide + CO2)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G37690.1	phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative.
RefSeq	XP_017223819.1	PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic [Daucus carota subsp. sativus]
Swiss-Prot	P55195	Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia OX=3918 GN=PURKE PE=2 SV=1
TrEMBL	A0A166GPY7	phosphoribosylaminoimidazole carboxylase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001864 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	9.504579	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.470791	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.617926	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	8.809182	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	7.147989	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.611571	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.16667	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.151966	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	22.088501	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.954269	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	20.769802	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	18.679956	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	18.311398	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.355938	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.005934	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.342003	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.661508	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.122698	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.509474	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.557822	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.872746	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.267753	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.988646	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.892766	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.899549	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	17.770817	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	14.347935	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	20.86533	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	17.018219	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	19.204737		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	19.568827		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	18.573341		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.725559		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.899747		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.467034		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	13.416709		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	14.484268		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.497999		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	26.526287	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	15.794653	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	25.889029	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	4.637804	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	10.730655	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	28.347416	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	20.075741	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	5.774848	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	19.455538	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.295816	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.286589	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.196744	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg11393, jg22689
Aizoaceae	Mesembryanthemum crystallinum	1	gene_12417
Amaranthaceae	Atriplex hortensis	1	Ah015441
Amaranthaceae	Beta vulgaris	2	BVRB_8g196130, BVRB_8g196140
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25364, Sbi_jg9216
Amaranthaceae	Salicornia europaea	1	Seu_jg19371
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011144
Amaranthaceae	Suaeda glauca	2	Sgl41805, Sgl46603
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000012069, gene:ENSEOMG00000034638 ... gene:ENSEOMG00000044087
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0014090, CQ.Regalona.r1.8BG0015420
Anacardiaceae	Pistacia vera	4	pistato.v30091390, pistato.v30183950, pistato.v30184030 ... pistato.v30184070
Apiaceae	Apium graveolens	1	Ag1G00942
Arecaceae	Cocos nucifera	1	COCNU_03G014360
Arecaceae	Phoenix dactylifera	1	gene-LOC103708454
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.1712.V1.1
Asteraceae	Flaveria trinervia	1	Ftri18G17923
Brassicaceae	Arabidopsis thaliana	2	AT2G05140.1, AT2G37690.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10016367m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp4g20070.v2.2
Brassicaceae	Brassica nigra	3	BniB01g007070.2N, BniB06g006840.2N, BniB08g023960.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0605, Ceq06G1397
Casuarinaceae	Casuarina glauca	2	Cgl01G0713, Cgl06G1459
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g13250
Dunaliellaceae	Dunaliella salina	1	Dusal.0073s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate09g15910, gene.Thate09g15930
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7882
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2679, evm.TU.LG03.2228
Plantaginaceae	Plantago ovata	1	Pov_00040172
Plumbaginaceae	Limonium bicolor	2	Lb1G05813, Lb5G28358
Poaceae	Echinochloa crus-galli	3	AH02.286, BH02.305, CH02.335
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0003010, gene-QOZ80_1BG0051490
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0244140.1
Poaceae	Lolium multiflorum	1	gene-QYE76_050918
Poaceae	Oryza coarctata	2	Oco01G004360, Oco02G004370
Poaceae	Oryza sativa	1	LOC_Os01g10280.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G027800, gene-BS78_K021800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0205258, Pt_Chr0503778
Poaceae	Sporobolus alterniflorus	3	Chr02G027580, Chr05G005290, Chr05G005310
Poaceae	Thinopyrum elongatum	1	Tel3E01G240100
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG017010, gene_TRIDC3BG022670
Poaceae	Triticum aestivum	3	TraesCS3A02G312300.1, TraesCS3B02G159900.1 ... TraesCS3D02G142100.1
Poaceae	Zea mays	2	Zm00001eb120570_P001, Zm00001eb284760_P002
Poaceae	Zoysia japonica	1	nbis-gene-32583
Poaceae	Zoysia macrostachya	1	Zma_g7295
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.2073, evm.TU.LG14.1249
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g14810
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.294
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-7858
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-5843
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-5353
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000012l.201
Rhizophoraceae	Kandelia obovata	1	Maker00011299
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-7760
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-269
Salicaceae	Populus euphratica	2	populus_peu15950, populus_peu19591
Solanaceae	Lycium barbarum	1	gene-LOC132614254
Solanaceae	Solanum chilense	1	SOLCI001502800
Solanaceae	Solanum pennellii	1	gene-LOC107004897
Tamaricaceae	Reaumuria soongarica	1	gene_5574
Tamaricaceae	Tamarix chinensis	1	TC02G1983
Zosteraceae	Zostera marina	2	Zosma03g05960.v3.1, Zosma06g30060.v3.1