Basic Information
Locus ID:
Ag1G00908
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 144562875 | 144564586 | - | Ag1G00908 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 47,013.03 Da | 82.54 | 69.78 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 167 | 210 | 4.01457E-19 | - |
| Pfam | PF13639 | Ring finger domain | 167 | 210 | 3.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 216 | 1.41E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 214 | 8.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 168 | 209 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 210 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 62 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18930.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017227396.1 | PREDICTED: RING-H2 finger protein ATL65 [Daucus carota subsp. sativus] | 0 |
| Q67YI6 | RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2 | 0 | |
| TrEMBL | A0A175YDU8 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029004 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.681051 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.775753 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.301748 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.207081 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.03403 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.542288 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.588162 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.567139 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.242195 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.463224 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.341478 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.956587 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.295372 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.410847 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.364762 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.520645 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.808524 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.768907 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.807115 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.169641 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.769953 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.422486 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.493398 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.119893 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.784438 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.70593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.630301 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.466501 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.921692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.50827 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.83644 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.881608 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.531255 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.982958 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.405421 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.209653 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.968858 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.881122 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.537664 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.169415 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.846181 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.049908 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.456125 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.704356 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.881529 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.747513 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.658503 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.082165 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.633093 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.154045 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1032, jg28728, jg28729 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21605 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010320 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12503, Sbi_jg45815 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20175 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022398 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00020, Sgl05088 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000039621, gene:ENSEOMG00000051938 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0008280, CQ.Regalona.r1.9AG0016190 |
| Apiaceae | Apium graveolens | 1 | Ag1G00908 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G010040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696059, gene-LOC103721172 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G18753 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020783m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g17020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g045450.2N, BniB07g030230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0033 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0039 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g03500 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.80 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035685 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3933, BH05.4020, CH05.4219 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0396400, gene-QOZ80_5BG0444690 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0436920.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000624, gene-QYE76_017574 |
| Poaceae | Oryza coarctata | 2 | Oco23G009680, Oco24G009390 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g40460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G129400 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018340, Chr06G019030, Chr19G008230, Chr27G008410 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G131600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG009710, gene_TRIDC5BG011340 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G062400.1.cds1, TraesCS5B02G069700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb030780_P001, Zm00001eb135320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30481 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26065 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1860, evm.TU.LG22.1 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2153, evm.TU.Scaffold_2_RagTag.257 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4943, nbisL1-mrna-5962 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16925, nbisL1-mrna-18715 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3385, nbisL1-mrna-9870 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.299, add.evm.TU.utg000016l.63 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005561, Maker00016566 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18608, nbisL1-mrna-22685 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1297, nbisL1-mrna-14081 |
| Salicaceae | Populus euphratica | 1 | populus_peu36422 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599127 |
| Solanaceae | Solanum chilense | 1 | SOLCI003003000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008420 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7804 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0531 |
| Zosteraceae | Zostera marina | 1 | Zosma06g06940.v3.1 |