Basic Information
Locus ID:
Ag1G00868
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
cyclase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 142113397 | 142116478 | + | Ag1G00868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 28,765.22 Da | 52.28 | 91.05 | -0.21 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35220.1 | Cyclase family protein. | 0 |
| RefSeq | XP_017232544.1 | PREDICTED: kynurenine formamidase [Daucus carota subsp. sativus] | 0 |
| Q94JT5 | Cyclase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=CYCLASE2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162B207 | Kynurenine formamidase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001639 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.697403 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.528567 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.333631 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.547569 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.46384 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.423123 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.358421 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.545945 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.580505 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.765608 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.916416 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.57013 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.678405 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.087813 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.329523 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.304528 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.96108 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.660041 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.595548 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.839517 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.733978 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.35372 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.421831 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.329951 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.632421 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.485143 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.273731 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.617132 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.978604 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.916217 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.706346 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.99851 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.908442 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.168655 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.052269 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.073034 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.965151 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28646 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009980, Ah009981 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g224110, BVRB_9g224130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11117, Sbi_jg46091 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20439 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005509, GOSA_00005510 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl22980, Sgl28091, Sgl55666, Sgl60884 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000016661, gene:ENSEOMG00000018555 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7BG0005270, CQ.Regalona.r1.9AG0019230 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30106920, pistato.v30106930 |
| Apiaceae | Apium graveolens | 4 | Ag1G00867, Ag1G00868, Ag4G02842, Ag6G02626 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697987 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3245.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G04655, Ftri7G11432, Ftri7G16820 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G44542.1, AT4G34180.1, AT4G35220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10025961m.g.v1.0, Thhalv10026013m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g28620.v2.2, Sp7g31940.v2.2, Sp7g31950.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB02g086800.2N, BniB02g086840.2N, BniB03g056990.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0372 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl02G2927, Cgl09G0410, Cgl09G0412, Cgl09G0420 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g00600 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0016s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g28750, gene.Thate04g28770 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG08.516, evm.TU.LG08.517, evm.TU.LG08.519 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007658 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G36847, Lb2G13582 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.1217, AH07.630, AH07.631, BH03.1378, BH07.756 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0104230, gene-QOZ80_2AG0104240 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.5HG0467870.1, HORVU.MOREX.r3.5HG0488750.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003885, gene-QYE76_021168, gene-QYE76_058791 |
| Poaceae | Oryza coarctata | 5 | Oco03G004420, Oco04G004410, Oco11G013550, Oco15G006080 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os02g09420.1, LOC_Os06g43180.1, LOC_Os08g23100.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G134300, gene-BS78_04G065500 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102662, Pt_Chr0202243, Pt_Chr0600862, Pt_Chr0705138 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G033720, Chr09G004570, Chr11G014390 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G275500, Tel5E01G404400, Tel6E01G347100 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC5AG026590, gene_TRIDC5AG039390 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS5A02G160800.2, TraesCS5A02G252700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb206470_P002, Zm00001eb221740_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-33555, nbis-gene-33556, nbis-gene-44146 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g12333, Zma_g12334, Zma_g15081, Zma_g15082, Zma_g31907 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.851, evm.TU.LG22.1073 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g12480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2074 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4848, nbisL1-mrna-5882 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16970 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3462 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.219 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016681 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14033, nbisL1-mrna-4780 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14015, nbisL1-mrna-19114 |
| Salicaceae | Populus euphratica | 5 | populus_peu01532, populus_peu01533, populus_peu01535 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599001, gene-LOC132628964 |
| Solanaceae | Solanum chilense | 2 | SOLCI001366600, SOLCI005940700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008030, gene-LOC107032119 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17805 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0924 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32250.v3.1 |