Basic Information
Locus ID:
Ag1G00855
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
homeobox protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 141560174 | 141576210 | + | Ag1G00855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 112,816.68 Da | 52.15 | 61.77 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15504 | PHD_PRHA_like | 390 | 442 | 1.13581E-26 | - |
| CDD | cd00086 | homeodomain | 837 | 892 | 9.6296E-12 | IPR001356 |
| Pfam | PF00046 | Homeodomain | 840 | 889 | 1.0E-9 | IPR001356 |
| Pfam | PF00628 | PHD-finger | 390 | 445 | 7.9E-10 | IPR019787 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 835 | 892 | 1.28E-11 | IPR009057 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 380 | 448 | 3.54E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 373 | 453 | 2.1E-12 | IPR013083 |
| Gene3D | G3DSA:1.10.10.60 | - | 832 | 903 | 6.5E-15 | - |
| SMART | SM00389 | HOX_1 | 833 | 896 | 1.8E-12 | IPR001356 |
| SMART | SM00249 | PHD_3 | 390 | 443 | 4.1E-9 | IPR001965 |
| ProSiteProfiles | PS50071 | 'Homeobox' domain profile. | 832 | 892 | 14.10653 | IPR001356 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 388 | 445 | 10.869499 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 391 | 442 | - | IPR019786 |
| ProSitePatterns | PS00027 | 'Homeobox' domain signature. | 867 | 890 | - | IPR017970 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 857 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 857 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1018 | - | - |
| Coils | Coil | Coil | 274 | 295 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19510.1 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain. Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains. | 0 |
| RefSeq | XP_017226930.1 | PREDICTED: pathogenesis-related homeodomain protein [Daucus carota subsp. sativus] | 0 |
| P48786 | Pathogenesis-related homeodomain protein OS=Petroselinum crispum OX=4043 GN=PRH PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YCZ5 | Homeobox protein HAT3.1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029097 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.216927 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.78784 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.939822 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.328681 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.545307 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.963908 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.812637 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.812623 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.213724 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.579372 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.456411 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.492605 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.757545 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.866704 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.269738 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.269468 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.956936 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.054256 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.31297 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.791774 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.992893 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.99379 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.253917 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.04562 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.300636 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.72351 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.578832 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.85007 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.495939 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.554504 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.773855 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.170384 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.416862 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.858253 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.023105 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.610225 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.49703 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.399266 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.909492 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.612315 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.05716 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.906113 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.709392 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.867472 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.348606 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.61921 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.721026 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.159761 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.781883 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.660119 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1136, jg15233 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26514, gene_2937 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000467, Ah019240 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g054330, BVRB_5g118590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg30667, Sbi_jg38063, Sbi_jg58607, Sbi_jg6193 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15648, Seu_jg28469 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006237, GOSA_00014842 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00692, Sgl05708, Sgl55094, Sgl83349 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004329, gene:ENSEOMG00000020670 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0000420, CQ.Regalona.r1.3BG0000340 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30104070, pistato.v30262780 |
| Apiaceae | Apium graveolens | 3 | Ag10G02722, Ag1G00855, Ag6G02642 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G019350, COCNU_06G017180, COCNU_11G013320 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700823, gene-LOC103713091, gene-LOC103722616 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.627.V1.1, AsparagusV1_03.2139.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G12011, Ftri14G23825, Ftri7G10563 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G19510.1, AT3G19530.1, AT4G29940.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022305m.g.v1.0, Thhalv10024489m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g17570.v2.2, Sp7g27750.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g044670.2N, BniB03g011150.2N, BniB05g007710.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2006, Ceq09G0316 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2193, Cgl09G0350 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g03990, gene.Cymno18g00850 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2002s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11050 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12, nbisL1-mrna-5669 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.529, evm.TU.LG08.559 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007718, Pov_00012209, Pov_00039460 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13563 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.3171, AH05.1708, AH07.365, BH02.3716, BH05.1860 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0101530, gene-QOZ80_2BG0154910 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0077220.1, HORVU.MOREX.r3.3HG0288670.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020373, gene-QYE76_055280 |
| Poaceae | Oryza coarctata | 5 | Oco03G002410, Oco04G002330, Oco09G014400, Oco11G005900 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os02g05450.1, LOC_Os06g12400.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G486900, gene-BS78_04G036900 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202763, Pt_Chr0504143, Pt_Chr0504147, Pt_Chr0602209 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr01G016960, Chr02G009830, Chr03G016020, Chr05G023640 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G563400, Tel3E01G002400, Tel3E01G450300 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG050040, gene_TRIDC1BG056900 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G338900.2, TraesCS1B02G351300.2 ... |
| Poaceae | Zea mays | 8 | Zm00001eb153100_P001, Zm00001eb232240_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25131, nbis-gene-33741 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11128, Zma_g12189, Zma_g28601 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1437, evm.TU.LG09.483, evm.TU.LG11.1313 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g20500, gene.Posoc07g13040 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.Scaffold_10_RagTag.1141, evm.TU.Scaffold_2_RagTag.382 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-25468, nbisL1-mrna-4816, nbisL1-mrna-5858 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-10234, nbisL1-mrna-14267, nbisL1-mrna-3692 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16711, nbisL1-mrna-3482, nbisL1-mrna-4807 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000008l.1188, evm.TU.utg000009l.733 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00001403, Maker00005599, Maker00015145, Maker00016288 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-14259, nbisL1-mrna-16571, nbisL1-mrna-2532 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-13992, nbisL1-mrna-14678, nbisL1-mrna-20965 ... |
| Salicaceae | Populus euphratica | 5 | populus_peu01564, populus_peu05834, populus_peu11201 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598971, gene-LOC132603227 |
| Solanaceae | Solanum chilense | 2 | SOLCI004606800, SOLCI006657500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008023, gene-LOC107024377 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.14104_chr08_-, STRG.11538_chr02_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0373, TC12G0432 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23900.v3.1 |