Basic Information
Locus ID:
Ag1G00844
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Mitotic checkpoint protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 140484163 | 140489674 | + | Ag1G00844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 37,597.67 Da | 32.95 | 71.32 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 19 | 45 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 126 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 269 | 0.0041 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 303 | 4.19E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 334 | 2.1E-92 | IPR015943 |
| SMART | SM00320 | WD40_4 | 221 | 269 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 126 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 307 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 8 | 45 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 85 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 170 | 73.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 94 | 126 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 94 | 126 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 278 | 10.642123 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 32 | 46 | 4.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 256 | 270 | 4.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 113 | 127 | 4.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19590.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein that may have a role in the spindle assembly checkpoint. | 0 |
| RefSeq | XP_017224444.1 | PREDICTED: mitotic checkpoint protein BUB3.1-like [Daucus carota subsp. sativus] | 0 |
| Q9LJN8 | Mitotic checkpoint protein BUB3.1 OS=Arabidopsis thaliana OX=3702 GN=BUB3.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YDN8 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.456505 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.102906 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.64914 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.50395 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.717842 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.466188 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.551937 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.097119 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 72.125793 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 67.58564 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 66.262695 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 54.590282 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 42.268272 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 48.283154 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.749454 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.012322 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.473858 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.362233 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.043955 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.45879 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.776911 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 34.983425 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 32.298363 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 49.809982 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.466145 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.545933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.705957 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.684113 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.939941 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.003034 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.734392 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.587862 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.317022 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 31.268217 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.138637 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.996504 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.03333 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.485366 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 36.150791 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.904893 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.111382 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.48818 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.042873 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.667072 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.399564 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.049508 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.000252 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 54.527061 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 54.113895 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.079079 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg28605, jg30205, jg9294 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11170, gene_3829 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013075, Ah015761 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g153130, BVRB_8g189660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25217, Sbi_jg42998, Sbi_jg45606, Sbi_jg9059 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11451, Seu_jg19527 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002080, GOSA_00011285 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl35730, Sgl35749, Sgl41047, Sgl43381, Sgl48184 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000002928, gene:ENSEOMG00000011133 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6BG0000350, CQ.Regalona.r1.8AG0011850 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30106460, pistato.v30227270 |
| Apiaceae | Apium graveolens | 3 | Ag1G00844, Ag1G01450, Ag7G01300 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705293, gene-LOC120107817 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1494.V1.1, AsparagusV1_08.1260.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G11853, Ftri9G34027 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G49910.1, AT1G69400.1, AT3G19590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009106m.g.v1.0, Thhalv10011632m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g36790.v2.2, Sp3g17630.v2.2, Sp5g24450.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g030470.2N, BniB05g066350.2N, BniB07g005560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1200, Ceq09G0277 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1264, Cgl09G0312 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g19220, gene.Cymno11g04180 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0486s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate09g05260, gene.Thate09g06100, gene.Thate09g06110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11153 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.323, evm.TU.LG08.597 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002328, Pov_00012168 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30782 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.3205, BH01.3567, BH01.661, CH01.3779, Contig309.24 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0229240, gene-QOZ80_3BG0274340 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0129480.1, HORVU.MOREX.r3.4HG0396550.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016440, gene-QYE76_040006 |
| Poaceae | Oryza coarctata | 5 | Oco05G016690, Oco05G024110, Oco06G017310, Oco06G025020 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g33580.1, LOC_Os03g55140.1, LOC_Os07g39950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G315500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105121, Pt_Chr0107257, Pt_Chr0107284, Pt_Chr0304687 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G004730, Chr04G013860, Chr04G029010, Chr07G013300 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G356600, Tel4E01G420800, Tel5E01G629700 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG024910, gene_TRIDC2AG024920 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G194000.1, TraesCS2B02G212800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb011600_P001, Zm00001eb057920_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-16224, nbis-gene-43500 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2750, Zma_g3401 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.852, evm.TU.LG01.853, evm.TU.LG04.2596 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g01220, gene.Posoc04g08380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.584, evm.TU.Scaffold_2_RagTag.405 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-26752, nbisL1-mrna-4790 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14474, nbisL1-mrna-5813 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15785, nbisL1-mrna-9751 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.294, evm.TU.utg000009l.717 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002538, Maker00005014 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11370, nbisL1-mrna-2548 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16495, nbisL1-mrna-23491 |
| Salicaceae | Populus euphratica | 4 | populus_peu01609, populus_peu06768, populus_peu20665 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598949, gene-LOC132642009 |
| Solanaceae | Solanum chilense | 2 | SOLCI003636500, SOLCI005208300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019024, gene-LOC107032384 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13660, gene_8247 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3016, TC10G0785 |
| Zosteraceae | Zostera marina | 2 | Zosma05g27600.v3.1, Zosma06g10290.v3.1 |