Basic Information
Locus ID:
Ag1G00843
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 140150190 | 140158174 | - | Ag1G00843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 38,233.15 Da | 56.83 | 68.44 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 112 | 2.83E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 117 | 2.8E-5 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 105 | 8.609239 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 299 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14835.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017223900.1 | PREDICTED: zinc finger protein-like 1 homolog [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5B7AEF8 | Putative zinc finger protein-like 1 OS=Davidia involucrata OX=16924 GN=Din_024543 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.205574 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.090902 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 21.262768 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.307104 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.180948 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.450018 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.977137 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.578154 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.123453 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.718227 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.825317 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.387619 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.281595 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.997208 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 34.083698 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 39.623764 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 39.256844 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 33.834801 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 32.571125 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 38.465897 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 29.94692 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 38.459183 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 34.26049 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 44.497681 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 39.040985 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 34.052032 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 33.416996 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 26.425972 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 39.170715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.408545 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.280848 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.360579 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.612124 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.774199 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.026508 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.314166 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.826028 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.261932 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.461971 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.269753 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.689813 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.53718 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 28.282257 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.251123 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.634031 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 30.691774 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.778515 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.222645 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.062086 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.164913 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1163, jg28604 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9505 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015765 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25218, Sbi_jg9061 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19526 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011284 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43379, Sgl48182 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012259, gene:ENSEOMG00000033768 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0011830, CQ.Regalona.r1.8BG0013780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30106550 |
| Apiaceae | Apium graveolens | 1 | Ag1G00843 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G003040, COCNU_13G006780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103705294, gene-LOC103718583, gene-LOC120107819 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3033.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G01155, Ftri3G09780 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G14835.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022769m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g28090.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g011790.2N, BniB04g027050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0276 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0311 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08960 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g19970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.598 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012167 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16660 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2435, BH01.2772, CH01.2978 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0121330, gene-QOZ80_2BG0176510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0032570.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_010920 |
| Poaceae | Oryza coarctata | 2 | Oco19G002550, Oco20G002710 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g20600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K135200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502330 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G007400, Chr09G007410, Chr13G017690, Chr13G017700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G234200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG018660, gene_TRIDC1BG022450 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G129200.1, TraesCS1B02G146000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb027340_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27556 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15923 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2606, evm.TU.LG08.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20240 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2027, evm.TU.Scaffold_2_RagTag.406 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4789, nbisL1-mrna-5837 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14278 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3501 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.716, evm.TU.utg000016l.248 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004891, Maker00016543 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2549, nbisL1-mrna-4810 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13971, nbisL1-mrna-16496 |
| Salicaceae | Populus euphratica | 2 | populus_peu01618, populus_peu36220 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598948 |
| Solanaceae | Solanum chilense | 1 | SOLCI003636600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008572 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12627_chr02_+, STRG.14563_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0788, TC12G0468 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08050.v3.1 |