Basic Information
Locus ID:
Ag1G00803
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 131984771 | 131988220 | + | Ag1G00803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 75,100.67 Da | 46.07 | 83.71 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 38 | 142 | 1.50148E-52 | - |
| Pfam | PF03000 | NPH3 family | 229 | 511 | 1.2E-109 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 36 | 132 | 4.71E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 34 | 136 | 3.2E-7 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 229 | 535 | 93.291435 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 47 | 115 | 8.916987 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 589 | 609 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64330.1 | Phototropic-responsive NPH3 family protein. Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains. | 0 |
| RefSeq | XP_017227412.1 | PREDICTED: root phototropism protein 3-like [Daucus carota subsp. sativus] | 0 |
| Q9FMF5 | Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A175YDV3 | Root phototropism protein 3-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.814575 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.535391 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.325183 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.90393 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.333079 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.43714 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.502978 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.486358 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.629868 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.735046 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.518772 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.012825 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.874695 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.579035 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.988388 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 36.233727 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 30.120987 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.664936 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 41.735523 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 29.318012 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.479342 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.587143 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.293053 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.078773 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.399601 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 42.839539 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 45.656189 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 37.265244 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 44.229183 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.835681 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.487212 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.964615 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.387785 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.122027 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.76692 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.335316 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.677488 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.976062 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.6998 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.884925 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.493828 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.300883 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.431988 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.105009 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.247219 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.304324 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.607494 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.211237 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.179403 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.487419 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26349, jg28512 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21527 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009370 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g221680 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10865, Sbi_jg47453 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21697 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018744 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55626, Sgl60838 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016992, gene:ENSEOMG00000017441 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0001560, CQ.Regalona.r1.9AG0022890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30102860 |
| Apiaceae | Apium graveolens | 2 | Ag1G00803, Ag9G00292 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007380, COCNU_13G003710 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711029, gene-LOC103722290 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1155.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G25380 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G64330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003710m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g27390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g012520.2N, BniB07g009480.2N, BniB07g042740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0606 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0644 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g02380 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g04680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1381 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002146 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G21990, Lb4G21994 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.3930, CH07.2174 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0134770, gene-QOZ80_2BG0190260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0552590.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_022985, gene-QYE76_023109, gene-QYE76_023113 |
| Poaceae | Oryza coarctata | 1 | Oco04G013190 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g35970.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G170500 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G013720, Chr13G009570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G208600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG010470, gene_TRIDC6BG016650 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G085100.1, TraesCS6B02G117400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb244600_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20686 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.429, evm.TU.LG22.1431 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g30010, gene.Posoc04g17490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1929, evm.TU.Scaffold_2_RagTag.514 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4679, nbisL1-mrna-5707 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2066, nbisL1-mrna-9478 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3593, nbisL1-mrna-9669 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.651, evm.TU.utg000016l.317 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005610, Maker00016656 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2610, nbisL1-mrna-4879 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13873, nbisL1-mrna-16592 |
| Salicaceae | Populus euphratica | 2 | populus_peu22755, populus_peu24177 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598824, gene-LOC132606430 |
| Solanaceae | Solanum chilense | 2 | SOLCI000740900, SOLCI006896500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008114, gene-LOC107031991 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12910_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0547 |