halophFGD

Basic Information

Locus ID: Ag1G00793

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: BPI/LBP/CETP C-terminal domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	130218519	130219967	-	Ag1G00793

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.26	26,250.45 Da	38.37	98.66	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02886	LBP / BPI / CETP family, C-terminal domain	112	206	9.6E-13	IPR001124
SUPERFAMILY	SSF55394	Bactericidal permeability-increasing protein, BPI	81	206	6.02E-17	IPR017943
Gene3D	G3DSA:3.15.20.10	-	51	216	8.5E-36	-

Gene Ontology

Molecular Function:

GO:0008289 (lipid binding)

KEGG Pathway

KO Term:

K05399 (lipopolysaccharide-binding protein)

Pathway:

map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G04970.2	lipid-binding serum glycoprotein family protein.
RefSeq	XP_017249161.1	PREDICTED: putative BPI/LBP family protein At1g04970 [Daucus carota subsp. sativus]
Swiss-Prot	Q9MAU5	Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana OX=3702 GN=At1g04970 PE=2 SV=1
TrEMBL	A0A164XNL7	Serine/threonine-protein phosphatase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016646 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.718303	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.304312	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg24573, jg38407
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12202, gene_20616
Amaranthaceae	Atriplex hortensis	2	Ah008913, Ah038293
Amaranthaceae	Beta vulgaris	2	BVRB_4g089210, BVRB_9g204550
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14531, Sbi_jg18348, Sbi_jg36733, Sbi_jg53786
Amaranthaceae	Salicornia europaea	2	Seu_jg10382, Seu_jg4676
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00012689, GOSA_00017423
Amaranthaceae	Suaeda glauca	4	Sgl23472, Sgl28599, Sgl78233, Sgl80725
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000010185, gene:ENSEOMG00000013451 ... gene:ENSEOMG00000017812, gene:ENSEOMG00000029385, gene:ENSEOMG00000039104, gene:ENSEOMG00000042976, gene:ENSEOMG00000053090
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0019380, CQ.Regalona.r1.4AG0023600 ... CQ.Regalona.r1.9AG0002410, CQ.Regalona.r1.9BG0020090
Anacardiaceae	Pistacia vera	2	pistato.v30017620, pistato.v30156220
Apiaceae	Apium graveolens	5	Ag11G03258, Ag1G00793, Ag4G02413, Ag5G00781, Ag5G02303
Arecaceae	Cocos nucifera	2	COCNU_01G012470, scaffold019163G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103696215, gene-LOC103713618
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2104.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G07835, Ftri2G05687
Brassicaceae	Arabidopsis thaliana	1	AT1G04970.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007436m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g03840.v2.2, Sp3g18300.v2.2
Brassicaceae	Brassica nigra	2	BniB06g045760.2N, BniB06g045770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1372, Ceq02G2323
Casuarinaceae	Casuarina glauca	2	Cgl01G1536, Cgl02G2411
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g04910
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g08830
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.2156, evm.TU.LG05.1944
Plantaginaceae	Plantago ovata	1	Pov_00008733
Plumbaginaceae	Limonium bicolor	4	Lb1G03435, Lb2G10880, Lb8G35663, Lb8G36484
Poaceae	Echinochloa crus-galli	7	AH03.2369, AH06.1277, BH03.2495, BH06.1324, CH03.2689 ... CH06.1431, Contig2201.4
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0518910, gene-QOZ80_6AG0539330 ... gene-QOZ80_6BG0471010, gene-QOZ80_6BG0492710
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0490240.1, HORVU.MOREX.r3.7HG0674970.2
Poaceae	Lolium multiflorum	2	gene-QYE76_006102, gene-QYE76_029566
Poaceae	Oryza coarctata	4	Oco11G008020, Oco12G008070, Oco17G007660, Oco18G007920
Poaceae	Oryza sativa	2	LOC_Os06g20430.1, LOC_Os09g30474.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G221200, gene-BS78_10G130600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0303850, Pt_Chr0303863, Pt_Chr0501120, Pt_Chr0701617
Poaceae	Sporobolus alterniflorus	3	Chr10G001580, Chr10G007540, Chr11G017160
Poaceae	Thinopyrum elongatum	3	Tel5E01G417800, Tel5E01G418000, Tel7E01G405500
Poaceae	Triticum dicoccoides	4	gene_TRIDC5AG019090, gene_TRIDC5BG043070 ... gene_TRIDC7AG028490, gene_TRIDC7BG020040
Poaceae	Triticum aestivum	7	TraesCS5A02G261100.1, TraesCS5A02G261300.1 ... TraesCS5B02G259600.1, TraesCS5D02G268700.1, TraesCS7A02G223700.1, TraesCS7B02G190500.1, TraesCS7D02G225400.1
Poaceae	Zea mays	2	Zm00001eb316440_P001, Zm00001eb381520_P001
Poaceae	Zoysia japonica	2	nbis-gene-10479, nbis-gene-51648
Poaceae	Zoysia macrostachya	2	Zma_g30524, Zma_g31808
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.2223, evm.TU.LG02.2224, evm.TU.LG02.515 ... evm.TU.LG09.1759, evm.TU.LG23.456
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g09450
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.1583, evm.TU.Scaffold_7_RagTag.123
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12072, nbisL1-mrna-19608
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1232, nbisL1-mrna-3981
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-10929, nbisL1-mrna-22295
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000006l.912, evm.TU.utg000028l.73
Rhizophoraceae	Kandelia obovata	2	Maker00010356, Maker00013377
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10439, nbisL1-mrna-8037
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-15519, nbisL1-mrna-22638
Salicaceae	Populus euphratica	2	populus_peu00923, populus_peu26959
Solanaceae	Lycium barbarum	1	gene-LOC132616871
Solanaceae	Solanum chilense	1	SOLCI005641400
Solanaceae	Solanum pennellii	1	gene-LOC107026378
Tamaricaceae	Reaumuria soongarica	2	STRG.24697_chr08_+, gene_2216
Tamaricaceae	Tamarix chinensis	2	TC03G0847, TC05G2681
Zosteraceae	Zostera marina	1	Zosma03g14350.v3.1