halophFGD

Basic Information

Locus ID: Ag1G00766

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Calcium-dependent protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	124628491	124630389	+	Ag1G00766

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.53	32,442.14 Da	42.00	87.39	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05117	STKc_CAMK	55	258	5.54528E-115	-
Pfam	PF00069	Protein kinase domain	56	257	3.8E-64	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	52	258	3.1E-72	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	47	276	3.1E-74	-
SMART	SM00220	serkin_6	56	287	3.6E-70	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	56	291	43.113659	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	176	188	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	62	85	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K13412 (calcium-dependent protein kinase [EC:2.7.11.1])

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G12480.1	calmodulin-domain protein kinase 7. calmodulin-domain protein kinase CDPK isoform 7 (CPK7)
RefSeq	XP_017219263.1	PREDICTED: calcium-dependent protein kinase 7-like [Daucus carota subsp. sativus]
Swiss-Prot	Q38873	Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana OX=3702 GN=CPK7 PE=2 SV=1
TrEMBL	A0A164TAP9	Calcium-dependent protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024418 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.651634	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	19.824512	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	18.986403	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	20.861494	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.389006	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	15.127652	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.915722	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	16.152996	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	40.501186	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	40.481045	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	41.227882	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	41.222645	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	33.910728	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	34.612804	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.235343	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.732268	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.927641	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	32.577755	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	24.661505	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	27.586611	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	33.388439	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	13.840035	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	19.819136	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.622852	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	17.569059	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	40.917595	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	31.711691	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	27.205458	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	29.788311	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.325126		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.067456		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.140984		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.063327		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.783269		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.290507		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.82838		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.246268		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.603233		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	31.134361	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	12.658507	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.34803	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	43.250275	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	68.800446	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	83.848549	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	86.872574	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	33.369511	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	74.223267	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.142758	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	7.674465	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.273458	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg58837
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00012123
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000004710, gene:ENSEOMG00000007423 ... gene:ENSEOMG00000023821
Apiaceae	Apium graveolens	1	Ag1G00766
Brassicaceae	Brassica nigra	1	BniS02554g190.2N
Plantaginaceae	Plantago ovata	1	Pov_00036522
Poaceae	Echinochloa crus-galli	2	BH07.84, Contig80_1.3
Poaceae	Lolium multiflorum	1	gene-QYE76_006613
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0600906
Poaceae	Sporobolus alterniflorus	2	Chr18G009170, Chr18G009200
Poaceae	Zea mays	1	Zm00001eb351760_P001
Poaceae	Zoysia japonica	1	nbis-gene-47862
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g08160
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.1077
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-18439
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-5700
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-798
Solanaceae	Lycium barbarum	1	gene-LOC132606690
Zosteraceae	Zostera marina	2	Zosma03g11280.v3.1, Zosma06g15170.v3.1