Basic Information
Locus ID:
Ag1G00741
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Kinetochore protein ndc80
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 121439997 | 121444304 | - | Ag1G00741 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 64,713.39 Da | 48.92 | 81.97 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03801 | HEC/Ndc80p family | 38 | 168 | 1.7E-25 | IPR005550 |
| Gene3D | G3DSA:1.10.418.30 | Ncd80 complex, Ncd80 subunit | 56 | 165 | 7.7E-22 | IPR038273 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| Coils | Coil | Coil | 320 | 347 | - | - |
| Coils | Coil | Coil | 247 | 309 | - | - |
| Coils | Coil | Coil | 209 | 243 | - | - |
| Coils | Coil | Coil | 473 | 507 | - | - |
| Coils | Coil | Coil | 441 | 468 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54630.1 | 0 | |
| RefSeq | XP_017224885.1 | PREDICTED: kinetochore protein ndc80 [Daucus carota subsp. sativus] | 0 |
| Q9M1G5 | Kinetochore protein NDC80 homolog OS=Arabidopsis thaliana OX=3702 GN=NDC80 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YDD6 | Kinetochore protein NDC80 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029239 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.583657 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.328668 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.648963 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.542437 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.788253 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.0917 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.324052 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.085933 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.709433 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.254381 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.105024 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.208782 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.491104 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.232884 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.49462 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.089724 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.296893 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.613206 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.061571 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.417148 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.701557 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.473574 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.382125 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.720351 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.527228 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.850148 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.420169 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.607186 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.059324 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.071424 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.108668 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.374966 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.413851 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.06696 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.53055 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.362459 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.116649 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.248953 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.970601 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.153735 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.846799 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.656294 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.714147 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28420 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20572 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020431 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30104, Sbi_jg43556 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18346 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004123 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66109, Sgl70425 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014956, gene:ENSEOMG00000031529 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015150, CQ.Regalona.r1.3BG0014860 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30124120, pistato.v30124970 |
| Apiaceae | Apium graveolens | 2 | Ag1G00741, Ag4G02164 |
| Arecaceae | Cocos nucifera | 1 | scaffold016572G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698245, gene-LOC103723562 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.395.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | FtriNA02367, FtriNA05310 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07820.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g057320.2N, BniB08g068870.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0700 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0754 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g12690 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0192s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g09990, gene.Thate01g10000, gene.Thate05g04170 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG07.48, evm.TU.LG08.1296, evm.TU.LG10.429 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00001532, Pov_00011649, Pov_00019003, Pov_00028718 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24608 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.1499, AH02.3460, BH02.1574, BH02.3493, CH02.1721 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0670020, gene-QOZ80_9BG0693480 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0526850.1, HORVU.MOREX.r3.5HG0527750.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031192, gene-QYE76_033457 |
| Poaceae | Oryza coarctata | 6 | Oco15G001360, Oco15G001370, Oco15G012980, Oco16G001480 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os08g36490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G138500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102240 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G022140, Chr03G007460, Chr05G013000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G766000, Tel5E01G775000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG068810, gene_TRIDC5AG069480 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G482600.1, TraesCS5A02G487800.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb040130_P002, Zm00001eb135950_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-51807, nbis-gene-55280, nbis-gene-6526 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10237, Zma_g5972 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.2792, evm.TU.LG05.2201, evm.TU.LG07.1367 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31050 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1596, evm.TU.Scaffold_2_RagTag.1597 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3690 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20408 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18983 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.351 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005063 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2783 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21817 |
| Salicaceae | Populus euphratica | 1 | populus_peu02549 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598735 |
| Solanaceae | Solanum chilense | 2 | SOLCI000672700, SOLCI002790300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006072 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28562_chr04_-, gene_5923 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G3287, TC02G3349 |
| Zosteraceae | Zostera marina | 1 | Zosma04g20300.v3.1 |