Basic Information
Locus ID:
Ag1G00691
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Etoposide-induced protein 2.4 (EI24)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 116102675 | 116108532 | + | Ag1G00691 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 43,166.87 Da | 35.62 | 99.28 | 0.19 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G06676.1 | 0 | |
| RefSeq | XP_017224164.1 | PREDICTED: protein EI24 homolog isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q5BPL5 | Protein EI24 homolog OS=Arabidopsis thaliana OX=3702 GN=At4g06676 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BR87 | Protein EI24 homolog OS=Nyssa sinensis OX=561372 GN=F0562_020269 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.218766 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.238684 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.292644 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.430385 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.674266 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.184703 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.218044 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.602847 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.085545 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.610743 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.194664 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.09408 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.510101 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.719862 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.939682 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.079424 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.955837 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.210527 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.459215 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.845894 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.631081 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.953583 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.17425 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.244535 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.898899 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.382162 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.131914 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.514578 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.240344 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.201 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.955871 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.730577 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.203872 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.658293 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.770734 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.128428 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.471918 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.95364 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.940787 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.520414 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.524172 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.258793 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.692963 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.914091 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 30.295546 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.523067 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.948479 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.543043 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.317619 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.214832 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17563 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006746 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g143680 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2520, Sbi_jg59676 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24206 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00023200, GOSA_00023201 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl44277, Sgl49041 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000344, gene:ENSEOMG00000000879 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012170, CQ.Regalona.r1.6BG0012070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30111700 |
| Apiaceae | Apium graveolens | 1 | Ag1G00691 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G010950 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701305, gene-LOC103703261 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.3224.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G08178 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G06676.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028801m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g10710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g056010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0425 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0463 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01640 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0110s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21000 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5619 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.805 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039950 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26789 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1031, BH09.1108, CH09.1243 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317250, gene-QOZ80_4BG0348550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044080 |
| Poaceae | Oryza coarctata | 2 | Oco07G006140, Oco08G006080 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g35380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G099700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302636, Pt_Chr0302668 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr25G011130, Chr25G011140, Chr26G006670, Chr30G010730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G537500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG044220, gene_TRIDC2BG046920 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G304600.1, TraesCS2B02G321300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb082660_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37833 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19714 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1283, evm.TU.LG14.590 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g19570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.611, evm.TU.Scaffold_2_RagTag.1451 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3742 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7322 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12246 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.69 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008538 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1011 |
| Salicaceae | Populus euphratica | 1 | populus_peu08271 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623739 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031863 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13782 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3681 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23410.v3.1 |