Basic Information
Locus ID:
Ag1G00638
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
PHD finger protein ALFIN-LIKE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 107501828 | 107504038 | - | Ag1G00638 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 19,598.24 Da | 64.08 | 55.20 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15613 | PHD_AL_plant | 116 | 166 | 5.97368E-24 | IPR044104 |
| Pfam | PF00628 | PHD-finger | 116 | 165 | 3.7E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 107 | 168 | 2.44E-16 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 165 | 4.6E-22 | IPR013083 |
| SMART | SM00249 | PHD_3 | 116 | 164 | 6.1E-8 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 114 | 166 | 9.3565 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 117 | 163 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 107 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02470.2 | alfin-like 6. AL6 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_043722362.1 | PHD finger protein ALFIN-LIKE 7-like [Telopea speciosissima] | 0 |
| Q40359 | PHD finger protein Alfin1 OS=Medicago sativa OX=3879 GN=ALFIN-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A438E999 | PHD finger protein Alfin1 OS=Vitis vinifera OX=29760 GN=ALFIN-1_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 4 | Ag1G00638, Ag1G00639, Ag7G00403, Ag7G01840 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005030 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26289 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5333 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG067680 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6903 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7207 |