Basic Information
Locus ID:
Ag1G00588
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
dna binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 99200273 | 99204516 | - | Ag1G00588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 31,723.89 Da | 25.04 | 79.40 | -0.12 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017224505.1 | PREDICTED: uncharacterized protein LOC108200769 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166GQS8 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001893 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.882477 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.148728 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.987899 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.973344 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.594208 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.394734 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.542325 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.683863 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.359869 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.212063 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.258045 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.198076 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.585108 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.114077 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.829274 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.344479 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.201239 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.267789 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.315414 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.017076 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.819915 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.068785 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.613017 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.137537 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.119729 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.363235 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.658144 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.034423 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.019364 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.01302 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.535288 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.705648 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.646872 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.237358 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.159791 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.988955 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.562204 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.397475 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.726845 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.854826 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.027319 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.253774 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.120645 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.053414 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.084299 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.701116 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.679649 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.364201 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.422805 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.505867 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1351, jg28286 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10267 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002702, Ah005379 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13372, Sbi_jg17628, Sbi_jg52474, Sbi_jg62296 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg873, Seu_jg9366, Seu_jg9367, Seu_jg9368 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007375 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24073, Sgl29256 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000027907, gene:ENSEOMG00000040487 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005070, CQ.Regalona.r1.4BG0004980 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30231650 |
| Apiaceae | Apium graveolens | 4 | Ag1G00588, Ag3G00471, Ag6G02887, Ag8G01825 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G000250, scaffold004145G000040 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103707684, gene-LOC103718161, gene-LOC103721210 ... |
| Asteraceae | Flaveria trinervia | 6 | Ftri14G00997, Ftri15G12616, Ftri15G31705, Ftri15G32367 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G09520.1, AT3G17460.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008580m.g.v1.0, Thhalv10022081m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g08120.v2.2, Sp3g15630.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g047330.2N, BniB02g004750.2N, BniB04g030350.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0451 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g14010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12201 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1671 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007090 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07266, Lb1G07269 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1358, AH05.830, BH02.1413, BH05.927, CH02.1550 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0405930, gene-QOZ80_5BG0454060 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0017870.1, HORVU.MOREX.r3.3HG0251790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009269 |
| Poaceae | Oryza coarctata | 5 | Oco02G006700, Oco02G008740, Oco03G000540, Oco10G001800 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g14330.1, LOC_Os01g18810.1, LOC_Os05g04540.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G127800, gene-BS78_09G034700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0500343, Pt_Chr0500446, Pt_Chr0603933, Pt_Chr0604101 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G012890, Chr02G021440, Chr03G006790, Chr08G007180 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G160200, Tel3E01G296700, Tel3E01G297100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG011230, gene_TRIDC1BG014010 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G080100.1, TraesCS1B02G098100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb129830_P001, Zm00001eb417400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13427, nbis-gene-50139 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26382 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1251, evm.TU.LG18.1505, evm.TU.LG20.373 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g12640, gene.Posoc02g34430 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60391.6, evm.TU.60392.6, evm.TU.Scaffold_3_RagTag.710 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1260 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6072 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-5115, nbisL1-mrna-6398 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000012l.8, add.evm.TU.utg000019l.327 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011000, Maker00012432 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18824, nbisL1-mrna-19932 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13144, nbisL1-mrna-16 |
| Salicaceae | Populus euphratica | 1 | populus_peu22338 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598509, gene-LOC132626630 |
| Solanaceae | Solanum chilense | 3 | SOLCI003773600, SOLCI006623400, SOLCI007109200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002007, gene-LOC107008524, gene-LOC107013617 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.17665_chr09_-, STRG.21961_chr08_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1440, TC12G1742 |
| Zosteraceae | Zostera marina | 2 | Zosma04g26730.v3.1, Zosma213g00050.v3.1 |