Basic Information
Locus ID:
Ag1G00573
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 97357497 | 97360923 | - | Ag1G00573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 69,452.07 Da | 42.38 | 97.31 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 342 | 614 | 4.92973E-93 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 151 | 249 | 5.8E-14 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 338 | 548 | 2.2E-50 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 51 | 132 | 4.2E-13 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 318 | 612 | 3.64E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 311 | 411 | 1.6E-29 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 33 | 135 | 1.2E-16 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 412 | 622 | 2.5E-57 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 145 | 252 | 1.5E-17 | IPR038408 |
| SMART | SM00220 | serkin_6 | 336 | 593 | 6.9E-36 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 33 | 135 | 15.312078 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 336 | 618 | 39.707367 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 145 | 252 | 16.660841 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 342 | 365 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 456 | 468 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70520.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 2. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_017224500.1 | PREDICTED: cysteine-rich receptor-like protein kinase 3 [Daucus carota subsp. sativus] | 0 |
| Q9CAL3 | Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana OX=3702 GN=CRK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YGK6 | Cysteine-rich receptor-like protein kinase 25 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029809 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.85849 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.292258 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.437482 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.827103 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.833855 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.538139 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.829969 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.411737 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.847636 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.587266 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.452335 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.298572 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.165821 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.321626 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.180332 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.158674 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.243349 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.142572 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.166421 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.081419 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.134939 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.55538 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.359513 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.193421 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.596513 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.160716 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.733325 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.573351 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.031681 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.918748 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.648813 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.662002 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.665709 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.726254 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.497423 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.70272 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.621914 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.565778 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.126783 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 24.753813 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 28.138966 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 46.471668 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.82332 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.873377 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.728123 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.273697 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.382098 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.779096 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.022082 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.938087 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19989, jg31015, jg31016 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30189500, pistato.v30211710, pistato.v30211720 ... |
| Apiaceae | Apium graveolens | 10 | Ag1G00564, Ag1G00565, Ag1G00566, Ag1G00568, Ag1G00570 ... |
| Arecaceae | Cocos nucifera | 2 | scaffold008549G000040, scaffold011035G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696787, gene-LOC103723943 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.488.V1.1 |
| Asteraceae | Flaveria trinervia | 18 | Ftri11G14745, Ftri12G25564, Ftri13G11556, Ftri17G00417 ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0814, Ceq08G0815 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G0823, Cgl08G0825 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00940 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021177, Pov_00021179 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.2086, Contig328.93 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0128400, gene-QOZ80_2BG0183800 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0044490.1, HORVU.MOREX.r3.3HG0221160.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011667 |
| Poaceae | Oryza coarctata | 2 | Oco19G006360, Oco20G006340 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g34220.1, LOC_Os11g28104.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G199800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502615 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G011520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G291700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG024250, gene_TRIDC1BG029490 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G159500.2, TraesCS1B02G175900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221490_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19164 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16223 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g14200, gene.Posoc06g14220 |
| Rhizophoraceae | Bruguiera sexangula | 6 | evm.TU.44380.1, evm.TU.53452.1, evm.TU.53454.1 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-16342, nbisL1-mrna-29524, nbisL1-mrna-29526 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12477, nbisL1-mrna-8445 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1184 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.879 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007051, Maker00008351 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13423, nbisL1-mrna-13424 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3890, nbisL1-mrna-3891 |
| Salicaceae | Populus euphratica | 3 | populus_peu01772, populus_peu24740, populus_peu24741 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615264, gene-LOC132616170 |
| Solanaceae | Solanum chilense | 1 | SOLCI006755500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003255 |