Basic Information
Locus ID:
Ag1G00566
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 96264620 | 96268460 | + | Ag1G00566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 71,510.53 Da | 39.36 | 87.91 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 334 | 595 | 5.44694E-99 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 145 | 242 | 2.0E-11 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 329 | 595 | 1.2E-49 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 35 | 129 | 2.7E-15 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 309 | 598 | 1.56E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 404 | 612 | 3.5E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 303 | 403 | 1.2E-30 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 29 | 132 | 6.9E-22 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 141 | 245 | 2.6E-16 | IPR038408 |
| SMART | SM00220 | serkin_6 | 328 | 605 | 4.9E-37 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 138 | 245 | 15.818995 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 328 | 615 | 38.562511 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 28 | 132 | 17.69278 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 334 | 356 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 448 | 460 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 647 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70520.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 2. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_017226745.1 | PREDICTED: putative receptor-like protein kinase At4g00960 [Daucus carota subsp. sativus] | 0 |
| Q9CAL3 | Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana OX=3702 GN=CRK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YFC8 | Cysteine-rich receptor-like protein kinase 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029807 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.002969 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.076757 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.485225 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.29962 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.12269 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.961892 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.686709 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.615365 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.731324 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.962448 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.634216 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.317893 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.922401 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.195311 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.613406 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.88667 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.304984 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 34.363472 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.454759 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 144.714554 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 199.248871 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.243748 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.159888 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.527879 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.946697 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.419724 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.701873 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.393565 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.859347 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 51.539734 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.249903 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.786558 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 188.474213 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 109.535629 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 281.668396 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 392.60968 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 113.395378 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 236.956253 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.521462 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 57.528778 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 71.854416 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 293.011078 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 70.135773 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 20.716024 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.217319 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 348.152466 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.265907 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.091567 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.1307 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.564116 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19989, jg31015, jg31016 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30189500, pistato.v30211710, pistato.v30211720 ... |
| Apiaceae | Apium graveolens | 10 | Ag1G00564, Ag1G00565, Ag1G00566, Ag1G00568, Ag1G00570 ... |
| Arecaceae | Cocos nucifera | 2 | scaffold008549G000040, scaffold011035G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696787, gene-LOC103723943 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.488.V1.1 |
| Asteraceae | Flaveria trinervia | 18 | Ftri11G14745, Ftri12G25564, Ftri13G11556, Ftri17G00417 ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0814, Ceq08G0815 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G0823, Cgl08G0825 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00940 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021177, Pov_00021179 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.2086, Contig328.93 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0128400, gene-QOZ80_2BG0183800 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0044490.1, HORVU.MOREX.r3.3HG0221160.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011667 |
| Poaceae | Oryza coarctata | 2 | Oco19G006360, Oco20G006340 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g34220.1, LOC_Os11g28104.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G199800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502615 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G011520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G291700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG024250, gene_TRIDC1BG029490 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G159500.2, TraesCS1B02G175900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221490_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19164 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16223 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g14200, gene.Posoc06g14220 |
| Rhizophoraceae | Bruguiera sexangula | 6 | evm.TU.44380.1, evm.TU.53452.1, evm.TU.53454.1 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-16342, nbisL1-mrna-29524, nbisL1-mrna-29526 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12477, nbisL1-mrna-8445 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1184 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.879 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007051, Maker00008351 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13423, nbisL1-mrna-13424 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3890, nbisL1-mrna-3891 |
| Salicaceae | Populus euphratica | 3 | populus_peu01772, populus_peu24740, populus_peu24741 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615264, gene-LOC132616170 |
| Solanaceae | Solanum chilense | 1 | SOLCI006755500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003255 |