Basic Information
Locus ID:
Ag1G00560
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
FACT complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 95445253 | 95450655 | + | Ag1G00560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 120,574.17 Da | 45.23 | 77.96 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01091 | CDC68-like | 204 | 444 | 1.68786E-99 | IPR033825 |
| Pfam | PF14826 | FACT complex subunit SPT16 N-terminal lobe domain | 25 | 190 | 1.9E-47 | IPR029148 |
| Pfam | PF00557 | Metallopeptidase family M24 | 207 | 436 | 8.5E-28 | IPR000994 |
| Pfam | PF08512 | Histone chaperone Rttp106-like | 838 | 924 | 3.5E-16 | IPR013719 |
| Pfam | PF08644 | FACT complex subunit (SPT16/CDC68) | 557 | 711 | 1.1E-49 | IPR013953 |
| SUPERFAMILY | SSF55920 | Creatinase/aminopeptidase | 201 | 463 | 7.33E-30 | IPR036005 |
| Gene3D | G3DSA:2.30.29.30 | - | 829 | 960 | 1.5E-54 | IPR011993 |
| Gene3D | G3DSA:3.40.350.10 | - | 24 | 196 | 1.4E-55 | IPR029149 |
| Gene3D | G3DSA:3.90.230.10 | Creatinase/methionine aminopeptidase superfamily | 197 | 458 | 5.4E-64 | IPR036005 |
| Gene3D | G3DSA:2.30.29.150 | - | 659 | 821 | 1.0E-58 | - |
| Gene3D | G3DSA:2.30.29.210 | FACT complex subunit Spt16p/Cdc68p | 533 | 658 | 1.2E-34 | - |
| SMART | SM01286 | SPT16_2 | 557 | 711 | 6.4E-83 | IPR013953 |
| SMART | SM01287 | Rtt106_2 | 836 | 926 | 8.9E-35 | IPR013719 |
| SMART | SM01285 | FACT_Spt16_Nlob_2 | 25 | 192 | 5.5E-75 | IPR029148 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 1073 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 982 | 1019 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 981 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1048 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10710.1 | global transcription factor C. encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC. | 0 |
| RefSeq | XP_017226557.1 | PREDICTED: FACT complex subunit SPT16-like [Daucus carota subsp. sativus] | 0 |
| Q8H6B1 | FACT complex subunit SPT16 OS=Zea mays OX=4577 GN=SPT16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YHJ5 | FACT complex subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.292455 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.775877 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.203756 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.151007 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.08409 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.848267 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.97782 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.113044 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.73832 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.54254 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.240838 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.255 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.738499 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.840101 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.516146 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.126647 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.450509 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.982676 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.66726 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.239391 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.732567 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.668447 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.480894 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.05496 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.09664 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.804001 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.222097 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.911451 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.335676 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.526986 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.580915 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.594083 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.438103 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.020788 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.910822 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.995741 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.908757 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.454452 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.727711 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.943501 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.929539 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.941588 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.59932 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.492592 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.907227 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.893052 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.699814 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.344903 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.248852 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.803078 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26490, jg28277, jg30002, jg30003 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10261 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005364 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17590, Sbi_jg62262 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg839 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007391 |
| Amaranthaceae | Suaeda glauca | 11 | Sgl14225, Sgl14407, Sgl19371, Sgl19576, Sgl19577, Sgl45926 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009507, gene:ENSEOMG00000029745 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0000310, CQ.Regalona.r1.4AG0004890 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30095750 |
| Apiaceae | Apium graveolens | 4 | Ag1G00560, Ag2G00322, Ag6G02010, Ag6G02871 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002440, COCNU_12G001840 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713979, gene-LOC103717831 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2247.V1.1, AsparagusV1_07.2829.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G21229 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G10670.1, AT4G10710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028377m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06780.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g041080.2N, BniB05g058310.2N, BniB08g051870.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G0475, Ceq06G0476 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G0486, Cgl06G0487 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0167s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8272 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1651, evm.TU.LG03.1652 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038171 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06698, Lb1G06711 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3378, AH09.531, BH01.4725, BH09.679 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0322830, gene-QOZ80_4BG0356180 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0104510.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_021674, gene-QYE76_021696, gene-QYE76_030380 ... |
| Poaceae | Oryza coarctata | 3 | Oco07G002930, Oco08G003260, Oco23G005990 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g25550.1, LOC_Os08g31240.1, LOC_Os12g26030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G130800, gene-BS78_10G036900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107714 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015870, Chr26G004020 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G054000, Tel2E01G054900, Tel2E01G055400 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG007560, gene_TRIDC2BG002050 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G017400.1, TraesCS2A02G069500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229990_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-49057, nbis-gene-49081, nbis-gene-49759 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19462, Zma_g21080 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1261, evm.TU.LG08.1263, evm.TU.LG22.166 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00880 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.26, evm.TU.Scaffold_1_RagTag.27 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2860, nbisL1-mrna-2936, nbisL1-mrna-8255 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3800, nbisL1-mrna-7793 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13634, nbisL1-mrna-5124 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000012l.12, evm.TU.utg000009l.12 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006202, Maker00011133 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13027, nbisL1-mrna-19927 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16095, nbisL1-mrna-24 |
| Salicaceae | Populus euphratica | 5 | populus_peu13175, populus_peu13176, populus_peu13177 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598495, gene-LOC132598497 |
| Solanaceae | Solanum chilense | 3 | SOLCI003275300, SOLCI003275400, SOLCI007501600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002544, gene-LOC107004067, gene-LOC107008231 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32274_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1430 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04850.v3.1 |