Basic Information
Locus ID:
Ag1G00516
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Putative S-adenosyl-L-methionine-dependent methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 85536928 | 85538762 | - | Ag1G00516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 54,346.80 Da | 42.37 | 92.71 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03141 | Putative S-adenosyl-L-methionine-dependent methyltransferase | 309 | 419 | 1.5E-7 | IPR004159 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 303 | 424 | 1.01E-10 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 289 | 459 | 1.6E-7 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05390.1 | 0 | |
| RefSeq | XP_017226026.1 | PREDICTED: uncharacterized protein LOC108202155 [Daucus carota subsp. sativus] | 0 |
| Q8RWB7 | Probable methyltransferase At1g29790 OS=Arabidopsis thaliana OX=3702 GN=CLSC5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YDR3 | S-adenosyl-L-methionine-dependent methyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029397 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.590653 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.623766 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.238132 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.418181 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.553824 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.147824 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.411741 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.497711 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.828383 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.892417 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.997404 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.906668 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.59317 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.909944 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.365221 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.08959 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.329439 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.199088 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.172471 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.092958 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.053625 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.02063 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.024051 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.025934 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.058627 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.132086 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.117128 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.316598 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.862594 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.318177 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.689258 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.182133 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.16543 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.103777 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1962, jg26570 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11989 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005772 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17101, Sbi_jg61649 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg364 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015323 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000011953, gene:ENSEOMG00000026049 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008410, CQ.Regalona.r1.4BG0008520 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30005080, pistato.v30083590, pistato.v30192800 |
| Apiaceae | Apium graveolens | 2 | Ag1G00516, Ag6G00016 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010700, COCNU_05G010710 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703787, gene-LOC103718547 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1863.V1.1, AsparagusV1_01.2734.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G18704, Ftri15G28087 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G05390.1, AT4G01240.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020681m.g.v1.0, Thhalv10028611m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g04250.v2.2, Sp6g00880.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g058200.2N, BniB05g059370.2N, BniB07g062420.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1201, Ceq06G1190 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1241, Cgl06G1244 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g10590 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g07660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6517 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2453, evm.TU.LG04.789 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00039258, Pov_00039275 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06683 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1515, BH06.1503, CH06.1650 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0520610, gene-QOZ80_6BG0473090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0677200.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029774 |
| Poaceae | Oryza coarctata | 1 | Oco11G009080 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g27980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K081300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G002660, Chr11G016140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G420300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG030190, gene_TRIDC7BG020980 |
| Poaceae | Triticum aestivum | 2 | TraesCS7A02G234400.1.cds1, TraesCS7B02G132700.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb260260_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43799 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31873 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG14.1866, evm.TU.LG18.1237, evm.TU.LG20.646 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g25120, gene.Posoc08g13580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.395, evm.TU.Scaffold_6_RagTag.396 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-10783, nbisL1-mrna-10801, nbisL1-mrna-15263 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5118 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5217 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18848 |
| Salicaceae | Populus euphratica | 3 | populus_peu09375, populus_peu15715, populus_peu31617 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600082, gene-LOC132634022, gene-LOC132645519 |
| Solanaceae | Solanum chilense | 3 | SOLCI001805600, SOLCI001845500, SOLCI004312300 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107014185, gene-LOC107015996, gene-LOC107016023 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1398, gene_17069, gene_6393 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0928, TC02G1475, TC03G2184 |
| Zosteraceae | Zostera marina | 6 | Zosma01g01860.v3.1, Zosma02g07540.v3.1, Zosma02g08700.v3.1 ... |