Basic Information
Locus ID:
Ag1G00504
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 83084816 | 83089990 | + | Ag1G00504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 58,757.65 Da | 40.99 | 86.08 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 350 | 9.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 192 | 524 | 6.23E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 374 | 534 | 4.4E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 177 | 370 | 2.2E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 352 | 393 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 439 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 240 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 350 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 482 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 301 | 15.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 249 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 316 | 352 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 359 | 11.143396 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 337 | 351 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_016452274.1 | PREDICTED: topless-related protein 3-like, partial [Nicotiana tabacum] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S0TQ43 | Topless-related 3-like isoform X2 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A000852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.436288 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.609212 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.215903 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.390126 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.513766 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.249195 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.420259 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.259151 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.131344 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.279738 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.093116 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.05582 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.036953 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.108886 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.047482 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.051907 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.120059 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.445877 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.197933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.037886 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.08493 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.214418 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.616537 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.272204 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.103448 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.113923 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.220288 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.546862 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.986439 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.668214 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.151164 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.887785 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.100586 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.472148 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.829538 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11623 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020459, gene:ENSEOMG00000023519 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30099700, pistato.v30131470, pistato.v30239300 ... |
| Apiaceae | Apium graveolens | 4 | Ag1G00504, Ag4G00115, Ag8G00391, Ag9G01177 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1192 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g04310 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G011540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G349600, Tel7E01G139800 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1074 |
| Rhizophoraceae | Rhizophora apiculata | 7 | nbisL1-mrna-12322, nbisL1-mrna-17438, nbisL1-mrna-17859 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-17231, nbisL1-mrna-23337, nbisL1-mrna-24305 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu33348 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006615 |