halophFGD

Basic Information

Locus ID: Ag1G00471

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Mitogen-activated protein kinase kinase kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	74858995	74866306	+	Ag1G00471

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.84	72,962.86 Da	55.36	77.87	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06606	STKc_MAPKKK	59	322	3.82908E-167	-
Pfam	PF00069	Protein kinase domain	61	322	1.0E-71	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	59	369	1.08E-86	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	59	360	1.9E-86	-
SMART	SM00220	serkin_6	60	322	2.2E-99	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	60	322	51.834339	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	184	196	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	66	89	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	644	661	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	624	661	-	-
Coils	Coil	Coil	93	120	-	-
Coils	Coil	Coil	612	632	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K20606 (mitogen-activated protein kinase kinase kinase ANP1 [EC:2.7.11.25])

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09000.1	NPK1-related protein kinase 1. NPK1-related protein kinase 1S
RefSeq	XP_017224355.1	PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Daucus carota subsp. sativus]
Swiss-Prot	Q40541	Mitogen-activated protein kinase kinase kinase NPK1 OS=Nicotiana tabacum OX=4097 GN=NPK1 PE=1 SV=1
TrEMBL	A0A175YF47	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029414 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.610657	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.724113	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.882869	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.380722	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.895929	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.011106	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.51146	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	9.146169	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.521891	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	17.986904	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	22.094011	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	20.814047	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	20.334236	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	18.392008	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.951664	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.835988	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.562653	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	11.037132	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.322706	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.079216	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	10.105262	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.950962	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.35243	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.596157	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.702956	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.793595	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.398458	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.154669	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.116071	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.474018		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.984285		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.855057		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	13.148848		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.973674		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.231352		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.258542		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.687093		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.858963		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	10.045086	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.224742	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.0196	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.691635	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	9.111135	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	11.784153	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	11.743778	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	7.343411	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.642097	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.007862	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.938114	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	13.645122	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg12538, jg27918, jg27919, jg5721
Aizoaceae	Mesembryanthemum crystallinum	1	gene_2638
Amaranthaceae	Atriplex hortensis	1	Ah020245
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg5075, Sbi_jg6852
Amaranthaceae	Salicornia europaea	1	Seu_jg13018
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00003857
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000012989, gene:ENSEOMG00000031082 ... gene:ENSEOMG00000041160
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0013970, CQ.Regalona.r1.3BG0014120
Anacardiaceae	Pistacia vera	3	pistato.v30083370, pistato.v30084290, pistato.v30237190
Apiaceae	Apium graveolens	3	Ag1G00295, Ag1G00471, Ag4G01867
Arecaceae	Cocos nucifera	3	COCNU_01G009490, COCNU_11G008720, COCNU_11G008730
Arecaceae	Phoenix dactylifera	2	gene-LOC103710024, gene-LOC120111327
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.3205.V1.1
Asteraceae	Flaveria trinervia	3	Ftri4G18642, Ftri8G20477, FtriNA24065
Brassicaceae	Arabidopsis thaliana	4	AT1G09000.1, AT1G54960.1, AT2G43930.1, AT3G06030.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10006999m.g.v1.0, Thhalv10020261m.g.v1.0 ... Thhalv10023309m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g07610.v2.2, Sp3g04970.v2.2, SpUn0004_0010.v2.2
Brassicaceae	Brassica nigra	2	BniB01g057630.2N, BniB04g030790.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1213, Ceq09G1311
Casuarinaceae	Casuarina glauca	2	Cgl06G1266, Cgl09G1402
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g06530, gene.Cymno03g08750
Dunaliellaceae	Dunaliella salina	1	Dusal.0042s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g10800
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5419
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1383, evm.TU.LG03.2428, evm.TU.LG11.1087
Plantaginaceae	Plantago ovata	1	Pov_00021255
Plumbaginaceae	Limonium bicolor	2	Lb4G24020, Lb4G24038
Poaceae	Echinochloa crus-galli	6	AH03.1802, AH08.1561, BH03.1941, BH08.1395, CH03.2144 ... CH08.1758
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0534200, gene-QOZ80_6BG0487250 ... gene-QOZ80_8AG0631200, gene-QOZ80_8BG0659880
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0478260.1
Poaceae	Lolium multiflorum	3	gene-QYE76_004882, gene-QYE76_031941, gene-QYE76_045404
Poaceae	Oryza coarctata	4	Oco15G008440, Oco16G008000, Oco17G004020, Oco18G003990
Poaceae	Oryza sativa	2	LOC_Os08g32600.1, LOC_Os09g21510.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G172600, gene-BS78_07G137100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0300765, Pt_Chr0403231
Poaceae	Sporobolus alterniflorus	6	Chr10G010820, Chr11G011590, Chr14G013290, Chr20G006110 ... Chr21G012410, Chr29G005840
Poaceae	Thinopyrum elongatum	2	Tel5E01G335700, Tel6E01G350900
Poaceae	Triticum dicoccoides	4	gene_TRIDC4BG005790, gene_TRIDC5AG011490 ... gene_TRIDC5AG032410, gene_TRIDC5BG034210
Poaceae	Triticum aestivum	7	TraesCS3A02G016500.1, TraesCS5A02G200800.1 ... TraesCS5B02G199400.1, TraesCS5B02G476300.1, TraesCS5D02G206500.1, TraesCS6B02G232400.1, TraesCS7D02G398000.1
Poaceae	Zea mays	3	Zm00001eb099000_P001, Zm00001eb179120_P003 ... Zm00001eb311780_P001
Poaceae	Zoysia japonica	3	nbis-gene-19965, nbis-gene-45105, nbis-gene-45106
Poaceae	Zoysia macrostachya	4	Zma_g22997, Zma_g22998, Zma_g24070, Zma_g32463
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1706, evm.TU.LG06.1710, evm.TU.LG11.1064 ... evm.TU.LG11.1065
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g21280
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.152, evm.TU.Scaffold_3_RagTag.472 ... evm.TU.Scaffold_6_RagTag.715
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-15975, nbisL1-mrna-8101
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4146, nbisL1-mrna-5113
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-5226, nbisL1-mrna-596
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.432, evm.TU.utg000012l.107
Rhizophoraceae	Kandelia obovata	2	Maker00007446, Maker00011504
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-15341, nbisL1-mrna-6334, nbisL1-mrna-7849 ... nbisL1-mrna-7853
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-140, nbisL1-mrna-3444
Salicaceae	Populus euphratica	4	populus_peu07349, populus_peu13415, populus_peu15750 ... populus_peu21346
Solanaceae	Lycium barbarum	2	gene-LOC132644967, gene-LOC132645897
Solanaceae	Solanum chilense	2	SOLCI004394800, SOLCI004421000
Solanaceae	Solanum pennellii	2	gene-LOC107011843, gene-LOC107012462
Tamaricaceae	Reaumuria soongarica	1	gene_9354
Tamaricaceae	Tamarix chinensis	1	TC12G1420
Zosteraceae	Zostera marina	2	Zosma01g11790.v3.1, Zosma04g16450.v3.1