Basic Information
Locus ID:
Ag1G00445
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 70691818 | 70703081 | + | Ag1G00445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 108,559.93 Da | 52.46 | 79.42 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12490 | Breast carcinoma amplified sequence 3 | 519 | 741 | 3.5E-65 | IPR022175 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 167 | 476 | 4.58E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 59 | 511 | 3.8E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 372 | 412 | 6.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 473 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 186 | 221 | 450.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 800 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54710.1 | homolog of yeast autophagy 18 (ATG18) H. | 0 |
| RefSeq | XP_017230391.1 | PREDICTED: autophagy-related protein 18h [Daucus carota subsp. sativus] | 0 |
| Q8H1Q5 | Autophagy-related protein 18h OS=Arabidopsis thaliana OX=3702 GN=ATG18H PE=2 SV=1 | 0 | |
| TrEMBL | A0A166GS13 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.160846 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.904334 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.053935 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.739356 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.255842 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.81249 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.10195 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.627881 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.127182 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.781545 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.989159 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.849614 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.056223 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.752601 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.903156 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.730409 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.681499 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.918539 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.517776 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.510378 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.829854 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.356999 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.160087 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.955966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.434854 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.041129 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.826714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.022507 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.022352 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.929211 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.280739 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.224288 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.407777 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.146217 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.132924 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.863743 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.517427 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.912813 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.965973 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.816293 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.146297 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 29.874502 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.664135 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.12343 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.188662 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.506462 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.24649 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.381664 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.195767 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.644774 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16106, jg35256, jg35257, jg8837, jg8838 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12029, gene_6256 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005828 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g083240, BVRB_6g148330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16968, Sbi_jg61502 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg235 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00008300, GOSA_00008302, GOSA_00008303, GOSA_00008304 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24693, Sgl24694, Sgl29848, Sgl29849 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009908, gene:ENSEOMG00000029642 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008880, CQ.Regalona.r1.4BG0009000 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30011370, pistato.v30086540 |
| Apiaceae | Apium graveolens | 2 | Ag1G00445, Ag6G02951 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017340, scaffold006566G000130 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710951, gene-LOC103721033 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.929.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G23316, Ftri18G01868 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03380.1, AT1G54710.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006706m.g.v1.0, Thhalv10023243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02380.v2.2, SpUN0002_0210.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018510.2N, BniB06g047430.2N, BniB07g044760.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1639, Ceq06G2302 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1699, Cgl06G2420 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g05160, gene.Cymno04g05170 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6291, nbisL1-mrna-7819 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2369, evm.TU.LG04.236 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008159, Pov_00024800 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06863 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2513, BH05.2592, CH05.2702 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0373620, gene-QOZ80_5BG0422650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0062840.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013323 |
| Poaceae | Oryza coarctata | 1 | Oco10G009240 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G140400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505196, Pt_Chr0506210 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G020790, Chr12G017210, Chr18G008920, Chr22G008730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G422000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037940, gene_TRIDC1BG043140 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G254200.1, TraesCS1B02G264000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287690_P001, Zm00001eb349780_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26839, Zma_g28225 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.589, evm.TU.LG18.1193, evm.TU.LG20.688 ... |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g10850, gene.Posoc01g10860, gene.Posoc03g10700 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.257, evm.TU.Scaffold_5_RagTag.929 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-21345, nbisL1-mrna-7952 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19924, nbisL1-mrna-4558, nbisL1-mrna-7719 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18429, nbisL1-mrna-5317 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.545, evm.TU.utg000006l.267 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00009508, Maker00011195, Maker00013868 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10026, nbisL1-mrna-1529, nbisL1-mrna-7785 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-230, nbisL1-mrna-5180, nbisL1-mrna-7549 |
| Salicaceae | Populus euphratica | 2 | populus_peu13465, populus_peu15806 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645193 |
| Solanaceae | Solanum chilense | 1 | SOLCI002883500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007355 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12996, gene_16982 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2373, TC06G0795 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20390.v3.1 |