Basic Information
Locus ID:
Ag1G00431
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine/Threonine protein kinases, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 61578666 | 61583608 | + | Ag1G00431 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 83,414.06 Da | 48.24 | 77.08 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05574 | STKc_phototropin_like | 350 | 706 | 2.41043E-179 | - |
| Pfam | PF00069 | Protein kinase domain | 353 | 504 | 2.8E-36 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 585 | 688 | 3.0E-19 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 335 | 711 | 2.34E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 583 | 706 | 1.8E-35 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 350 | 435 | 1.2E-51 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 436 | 511 | 1.2E-51 | - |
| SMART | SM00220 | serkin_6 | 352 | 688 | 1.1E-85 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 352 | 688 | 43.777958 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 473 | 485 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 316 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44830.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017227309.1 | PREDICTED: serine/threonine-protein kinase D6PKL1-like [Daucus carota subsp. sativus] | 0 |
| Q39183 | Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana OX=3702 GN=D6PKL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YED6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029468 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.5065 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.538442 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.801652 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.993543 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.920853 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.219337 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.307871 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.162649 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.079273 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.862597 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.440166 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.027945 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.962112 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.231191 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.171351 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.605914 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.998528 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.881623 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.723524 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.575652 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.772954 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.062922 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.503629 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.028453 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.006269 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.224069 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.794168 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.03004 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.922475 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.755403 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.571688 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.586205 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.396519 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.148247 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.302692 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.111287 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.922482 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.109765 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.469272 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.267065 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.458189 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.624893 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.972669 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.826827 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.980566 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.16964 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.029552 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.117023 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.359528 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.047201 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1759, jg26781, jg29167, jg29723 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1295 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023314 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29162, Sbi_jg3381 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6564 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000163 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11415, Sgl16795 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014848, gene:ENSEOMG00000033753 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0007400, CQ.Regalona.r1.2BG0022140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30001660 |
| Apiaceae | Apium graveolens | 2 | Ag1G00431, Ag5G01190 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005090, COCNU_10G003450 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704667, gene-LOC103713591 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3255.V1.1, AsparagusV1_08.296.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G29114, Ftri7G27003 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G44830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001322m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g26920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g001830.2N, BniB06g003220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1058 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g07300 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g24810, gene.Thate05g01590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.66 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032377 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28103 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2889, AH09.1790, BH01.3228, BH09.1971, CH01.3460 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0116870, gene-QOZ80_2BG0170590 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0185660.1, HORVU.MOREX.r3.6HG0600090.1 |
| Poaceae | Oryza coarctata | 6 | Oco03G017040, Oco04G017740, Oco07G012180, Oco08G011890 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g43740.1, LOC_Os04g46180.1, LOC_Os10g41290.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G284000, gene-BS78_06G178300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301832, Pt_Chr0503212 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G027650, Chr09G005190, Chr13G019680, Chr15G018840 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G674500, Tel6E01G458400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1BG038400, gene_TRIDC2AG056770 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1D02G220100.1, TraesCS2A02G392900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb023710_P001, Zm00001eb390980_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36376 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12924, Zma_g15695, Zma_g20172 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.997, evm.TU.LG19.697, evm.TU.LG24.682 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g17950, gene.Posoc08g01950 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.240, evm.TU.Scaffold_8_RagTag.1483 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19479, nbisL1-mrna-8366, nbisL1-mrna-8444 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17586, nbisL1-mrna-18402 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15193 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.134, evm.TU.utg000028l.145 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003739, Maker00010586 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8107, nbisL1-mrna-9476 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18849, nbisL1-mrna-22790, nbisL1-mrna-9797 |
| Salicaceae | Populus euphratica | 1 | populus_peu31880 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132636883, gene-LOC132645796 |
| Solanaceae | Solanum chilense | 2 | SOLCI002682700, SOLCI007098800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008346, gene-LOC107032234 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3239 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2264 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02980.v3.1 |