Basic Information
Locus ID:
Ag1G00394
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the AAA ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 46452919 | 46454578 | + | Ag1G00394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 57,451.32 Da | 53.41 | 83.53 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 227 | 372 | 2.74413E-7 | - |
| Pfam | PF14363 | Domain associated at C-terminal with AAA | 21 | 116 | 6.0E-22 | IPR025753 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 231 | 371 | 5.0E-13 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 155 | 396 | 3.01E-41 | IPR027417 |
| Gene3D | G3DSA:6.10.280.40 | - | 371 | 442 | 6.4E-7 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 182 | 370 | 1.2E-38 | IPR027417 |
| SMART | SM00382 | AAA_5 | 226 | 371 | 1.8E-4 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 343 | 361 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 489 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57480.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_017224448.1 | PREDICTED: AAA-ATPase At4g30250-like [Daucus carota subsp. sativus] | 0 |
| Q9FKM3 | AAA-ATPase At5g57480 OS=Arabidopsis thaliana OX=3702 GN=At5g57480 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B6YM43 | AAA domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_002313 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.159373 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.457348 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.893554 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.167717 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.474813 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.145666 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.681857 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.424147 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.691763 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.738554 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.1204 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.730846 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.791446 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.650896 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.186925 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.845076 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.462356 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.159934 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.602337 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.522228 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 86.859779 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 105.484245 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 86.018112 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 60.851357 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.823427 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.744656 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.58497 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 33.774059 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.263044 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.305385 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.322945 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.025638 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.905273 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.960417 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.161756 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.450623 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.244258 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.505964 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.407265 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.809404 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.342161 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.754299 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.082991 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.993561 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.419688 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.580193 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.39156 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.599697 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.324413 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29082, jg29798 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30231190 |
| Apiaceae | Apium graveolens | 1 | Ag1G00394 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G003530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708667 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.474.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0535 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0567 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g10340 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g21200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.7 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.2307, CH03.2419 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536760, gene-QOZ80_6BG0490080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485200.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005441 |
| Poaceae | Oryza coarctata | 2 | Oco17G006080, Oco18G006180 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g27340.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G198700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702030 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G008860, Chr14G014860, Chr21G013880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G376700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG036760, gene_TRIDC5BG038780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G231800.1.cds1, TraesCS5B02G230100.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19730, nbis-gene-30675 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32633 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g04710 |
| Salicaceae | Populus euphratica | 2 | populus_peu02197, populus_peu35606 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645072 |
| Solanaceae | Solanum chilense | 1 | SOLCI006005900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014207 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25850.v3.1 |