halophFGD

Basic Information

Locus ID: Ag1G00379

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Jacalin-like lectin domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	43591593	43594883	+	Ag1G00379

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.26	12,379.95 Da	44.41	91.48	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF51101	Mannose-binding lectins	62	107	1.7E-5	IPR036404

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017235879.1	PREDICTED: jacalin-related lectin 19 [Daucus carota subsp. sativus]	0
TrEMBL	A0A166EML8	Jacalin-type lectin domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007605 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	16.056313	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	17.711668	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.019295	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	23.790707	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	25.126907	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.969199	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	17.155952	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.617072	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	31.719984	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	32.642052	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	34.125156	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	33.644417	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	32.248501	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	23.850388	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	15.583547	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	22.535528	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	71.955582	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	35.07304	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	43.872608	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	35.787315	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	53.826492	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	222.861374	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	187.337891	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	263.412323	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	209.445129	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	66.373726	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	53.707626	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	87.890564	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	62.813122	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	20.35906		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	43.48914		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	27.137697		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	85.944336		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	66.05957		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	83.181686		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	58.599194		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	31.172028		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	32.904331		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.355627	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	24.002613	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	13.681982	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	18.210188	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	9.764975	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	31.628519	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	68.424377	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	14.462182	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	45.444542	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	36.631161	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	91.339546	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	90.609169	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10582, jg13569, jg22875, jg27248
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23077, gene_23079
Amaranthaceae	Atriplex hortensis	2	Ah011355, Ah023472
Amaranthaceae	Beta vulgaris	4	BVRB_1g006640, BVRB_1g006650, BVRB_1g006670, BVRB_9g211560
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg28803, Sbi_jg3146, Sbi_jg3153, Sbi_jg39146
Amaranthaceae	Salicornia europaea	2	Seu_jg11011, Seu_jg6762
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000023, GOSA_00009615, GOSA_00014151
Amaranthaceae	Suaeda glauca	9	Sgl11510, Sgl11514, Sgl11516, Sgl11596, Sgl11600, Sgl16965 ... Sgl16968, Sgl17093, Sgl17097
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000013345, gene:ENSEOMG00000013653 ... gene:ENSEOMG00000015107, gene:ENSEOMG00000033716, gene:ENSEOMG00000035061, gene:ENSEOMG00000039654, gene:ENSEOMG00000047367, gene:ENSEOMG00000049597, gene:ENSEOMG00000052705
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0008880, CQ.Regalona.r1.1BG0016950 ... CQ.Regalona.r1.1BG0016970, CQ.Regalona.r1.7AG0015310, CQ.Regalona.r1.9BG0011020
Anacardiaceae	Pistacia vera	1	pistato.v30116130
Apiaceae	Apium graveolens	4	Ag1G00379, Ag2G02820, Ag4G02274, Ag6G01416
Arecaceae	Cocos nucifera	2	COCNU_06G013050, COCNU_06G013120
Arecaceae	Phoenix dactylifera	2	gene-LOC103717797, gene-LOC103719297
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2115.V1.1, AsparagusV1_05.2895.V1.1 ... AsparagusV1_08.2928.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G02662, Ftri10G07324, Ftri10G25229, Ftri10G27720 ... Ftri10G32015, Ftri18G05095
Brassicaceae	Arabidopsis thaliana	2	AT1G19715.3, AT1G73040.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007145m.g.v1.0, Thhalv10019210m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g17550.v2.2, Sp5g28000.v2.2
Brassicaceae	Brassica nigra	3	BniB03g008330.2N, BniB04g034420.2N, BniB05g070250.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0901, Ceq03G0975
Casuarinaceae	Casuarina glauca	2	Cgl02G0914, Cgl03G1061
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g09320, gene.Cymno16g03180
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03190, gene.Thate01g03210, gene.Thate09g07520
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.13, evm.TU.LG06.628
Plantaginaceae	Plantago ovata	1	Pov_00015244
Plumbaginaceae	Limonium bicolor	12	Lb0G36806, Lb0G37360, Lb0G38063, Lb0G38278, Lb0G38317 ... Lb1G00549, Lb1G00551, Lb1G00554, Lb1G02726, Lb2G09419, Lb7G34303, Lb8G35786
Poaceae	Echinochloa crus-galli	9	AH02.3457, AH05.1812, AH08.2131, BH02.3499, BH05.1978 ... CH02.3041, CH02.3531, CH05.2044, CH08.2422
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035380, gene-QOZ80_1BG0080450 ... gene-QOZ80_1BG0085430, gene-QOZ80_5AG0364930, gene-QOZ80_5AG0367290, gene-QOZ80_5BG0412790, gene-QOZ80_5BG0415010
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0076420.1, HORVU.MOREX.r3.1HG0080180.1 ... HORVU.MOREX.r3.3HG0223290.1, HORVU.MOREX.r3.3HG0292920.1, HORVU.MOREX.r3.7HG0682630.1
Poaceae	Lolium multiflorum	14	gene-QYE76_000100, gene-QYE76_014812, gene-QYE76_016264 ... gene-QYE76_017484, gene-QYE76_024985, gene-QYE76_030195, gene-QYE76_048484, gene-QYE76_048486, gene-QYE76_049155, gene-QYE76_049156, gene-QYE76_049165, gene-QYE76_049168, gene-QYE76_049169, gene-QYE76_049171
Poaceae	Oryza coarctata	7	Oco02G018700, Oco02G022290, Oco09G013680, Oco09G015600 ... Oco10G013760, Oco10G015470, Oco15G010450
Poaceae	Oryza sativa	2	LOC_Os01g51050.1, LOC_Os05g43240.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G250500, gene-BS78_03G294300, gene-BS78_K113200 ... gene-BS78_09G195900, gene-BS78_09G219000
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0205493, Pt_Chr0205497, Pt_Chr0206968, Pt_Chr0206969 ... Pt_Chr0403695, Pt_Chr0503873, Pt_Chr0503896, Pt_Chr0504260, Pt_Chr0504311, Pt_Chr0601571, Pt_Chr0601601, Pt_Chr0700174
Poaceae	Sporobolus alterniflorus	11	Chr01G014880, Chr02G008190, Chr02G011660, Chr05G025350 ... Chr12G022010, Chr18G013400, Chr18G015100, Chr20G001510, Chr22G002450, Chr22G004290, Chr29G001880
Poaceae	Thinopyrum elongatum	4	Tel1E01G530900, Tel1E01G591000, Tel3E01G506800 ... Tel7E01G451800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG048350, gene_TRIDC1BG054910 ... gene_TRIDC1BG061170, gene_TRIDC3AG045650, gene_TRIDC3BG023590, gene_TRIDC3BG051780
Poaceae	Triticum aestivum	23	TraesCS1A02G325500.1, TraesCS1A02G363600.1 ... TraesCS1B02G338600.1, TraesCS1B02G380700.1, TraesCS1D02G327100.1, TraesCS1D02G367900.1, TraesCS1D02G368600.1, TraesCS3A02G131600.1, TraesCS3A02G321000.1, TraesCS3B02G031800.1, TraesCS3B02G032600.1, TraesCS3B02G052500.1, TraesCS3B02G053100.1, TraesCS3B02G165200.1, TraesCS3B02G344800.1, TraesCS3D02G028700.1, TraesCS3D02G029200.1, TraesCS3D02G310300.1, TraesCS6A02G105700.1, TraesCS6B02G135000.1, TraesCS7A02G256100.1, TraesCS7B02G152700.1, TraesCS7D02G254500.1
Poaceae	Zea mays	4	Zm00001eb292320_P001, Zm00001eb342390_P002 ... Zm00001eb362900_P001, Zm00001eb369990_P001
Poaceae	Zoysia japonica	5	nbis-gene-11766, nbis-gene-11767, nbis-gene-12697 ... nbis-gene-14375, nbis-gene-24999
Poaceae	Zoysia macrostachya	5	Zma_g24404, Zma_g26906, Zma_g28703, Zma_g8504, Zma_g8764
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1672, evm.TU.LG10.1158, evm.TU.LG19.563 ... evm.TU.LG24.25
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g11420, gene.Posoc04g19300, gene.Posoc09g05680
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_8_RagTag.1285, evm.TU.Scaffold_8_RagTag.1286
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-9058, nbisL1-mrna-9061, nbisL1-mrna-9062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19028
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15363
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.421
Rhizophoraceae	Kandelia obovata	1	Maker00002978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13340, nbisL1-mrna-13341
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11138, nbisL1-mrna-11139
Salicaceae	Populus euphratica	6	populus_peu15272, populus_peu15273, populus_peu23891 ... populus_peu23895, populus_peu30628, populus_peu32931
Solanaceae	Lycium barbarum	5	gene-LOC132611111, gene-LOC132620346, gene-LOC132623605 ... gene-LOC132629141, gene-LOC132633440
Solanaceae	Solanum chilense	4	SOLCI001343200, SOLCI001343300, SOLCI001819000 ... SOLCI003839100
Solanaceae	Solanum pennellii	4	gene-LOC107002166, gene-LOC107014445, gene-LOC107016210 ... gene-LOC107017061
Tamaricaceae	Reaumuria soongarica	9	STRG.18917_chr07_-, STRG.18921_chr07_-, STRG.18923_chr07_- ... gene_10845, gene_10846, gene_155, gene_1697, gene_4839, gene_6767
Tamaricaceae	Tamarix chinensis	5	TC04G1639, TC08G1814, TC08G1816, TC08G1817, TC08G1820
Zosteraceae	Zostera marina	1	Zosma05g12300.v3.1