Basic Information
Locus ID:
Ag1G00359
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
acyl-activating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 37476638 | 37499991 | + | Ag1G00359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 129,539.64 Da | 37.35 | 96.49 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05930 | A_NRPS | 121 | 593 | 1.06558E-124 | - |
| Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 510 | 587 | 1.5E-6 | IPR025110 |
| Pfam | PF00550 | Phosphopantetheine attachment site | 617 | 669 | 2.2E-4 | IPR009081 |
| Pfam | PF00501 | AMP-binding enzyme | 121 | 501 | 1.3E-52 | IPR000873 |
| Pfam | PF13360 | PQQ-like domain | 953 | 1102 | 7.6E-7 | IPR002372 |
| Pfam | PF01011 | PQQ enzyme repeat | 871 | 905 | 2.6E-7 | IPR002372 |
| SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 18 | 598 | 1.31E-90 | - |
| SUPERFAMILY | SSF47336 | ACP-like | 610 | 669 | 1.32E-6 | IPR036736 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 795 | 1161 | 7.85E-31 | IPR011047 |
| Gene3D | G3DSA:3.30.300.30 | - | 497 | 599 | 5.3E-23 | - |
| Gene3D | G3DSA:3.40.50.12780 | - | 97 | 496 | 1.5E-69 | IPR042099 |
| Gene3D | G3DSA:2.130.10.10 | - | 790 | 973 | 8.7E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 974 | 1162 | 2.1E-22 | IPR015943 |
| Gene3D | G3DSA:1.10.1200.10 | - | 604 | 680 | 8.1E-6 | IPR036736 |
| SMART | SM00564 | ire1_9 | 990 | 1022 | 99.0 | IPR018391 |
| SMART | SM00564 | ire1_9 | 1033 | 1065 | 3.8 | IPR018391 |
| SMART | SM00564 | ire1_9 | 862 | 895 | 0.0098 | IPR018391 |
| SMART | SM00564 | ire1_9 | 821 | 853 | 13.0 | IPR018391 |
| ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 230 | 241 | - | IPR020845 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35930.4 | - | 0 |
| RefSeq | XP_017227352.1 | PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4K1G2 | Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana OX=3702 GN=At5g35930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YFI6 | Acyl-activating enzyme 19 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029554 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.61814 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.878366 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.930977 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.377485 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.321809 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.247394 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.75547 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.371349 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.289092 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.307549 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.154384 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.350253 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.379733 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.505595 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.958484 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.976561 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.497351 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.597507 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.913646 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.541058 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.203046 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.308645 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.57158 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.251827 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.362638 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.38133 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.833473 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.526 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.505106 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.454433 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.521274 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.029007 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.731799 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.756327 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.643159 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.226024 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.200392 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.762683 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.210988 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.896175 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.00165 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.55395 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.662948 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.631036 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.394678 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.887646 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.297781 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.93759 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.25825 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.906968 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29781 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13565 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000361 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30738, Sbi_jg58523 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28396 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004962 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55005, Sgl60264 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000051801 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024940, CQ.Regalona.r1.9BG0019990 |
| Apiaceae | Apium graveolens | 1 | Ag1G00359 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G005370, COCNU_08G005380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696082 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.130.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G13832 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003545m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g06220.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g017630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1511 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1544 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g00440 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.3863s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1882 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031236 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34057 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.77, BH06.81, CH06.74 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0458450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0639150.1 |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_017878, gene-QYE76_017879, gene-QYE76_017880 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G000650, Oco12G000540 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g02160.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G008800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400506, Pt_Chr0402369 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G014670, Chr14G000720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G069200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG067130, gene_TRIDC7AG003220 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3D02G491300.2, TraesCS7A02G011700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb378990_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51211 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31234 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1082, evm.TU.LG09.891 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1748, evm.TU.Scaffold_2_RagTag.1749 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3057, nbisL1-mrna-3114 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-335 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13941 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.250 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005393 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12781 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16420 |
| Salicaceae | Populus euphratica | 1 | populus_peu19246 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645145 |
| Solanaceae | Solanum chilense | 1 | SOLCI005586200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007647 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1573_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0906 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02570.v3.1 |