Basic Information
Locus ID:
Ag1G00348
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 33418711 | 33433650 | - | Ag1G00348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 55,079.26 Da | 34.87 | 82.58 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 69 | 304 | 2.8E-25 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 63 | 307 | 5.69E-43 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 382 | 474 | 3.99E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 379 | 488 | 1.9E-10 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 27 | 131 | 2.0E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 133 | 325 | 1.8E-40 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 56 | 322 | 21.827856 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46570.1 | BR-signaling kinase 2. Encodes BR-signaling kinase 2 (BSK2), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized. | 0 |
| RefSeq | XP_017227176.1 | PREDICTED: probable serine/threonine-protein kinase At4g35230 [Daucus carota subsp. sativus] | 0 |
| Q9LS26 | Serine/threonine-protein kinase BSK2 OS=Arabidopsis thaliana OX=3702 GN=BSK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YE69 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029542 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.941027 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.038116 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.735289 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.43154 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.118469 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.329189 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.693293 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.271062 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 43.060345 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 42.594166 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 48.52623 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 41.957748 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.608852 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 35.172165 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.788952 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.272821 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.947878 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.09347 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 22.309044 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.379606 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.056185 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.965502 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.162931 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.078308 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.102436 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.505747 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.94755 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.996691 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.561506 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.625454 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.342186 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.073004 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.565004 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.645823 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.331021 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.662825 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.421104 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.326515 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 21.148937 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.801214 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.652725 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.946616 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.720281 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.508917 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.257172 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 16.42296 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.331686 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.73901 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.235979 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.366972 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26744, jg29769 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2096 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016102 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24471, Sbi_jg8319 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11722 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001651 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51417, Sgl56659 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000032157, gene:ENSEOMG00000047679 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0011520 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30001040, pistato.v30028920 |
| Apiaceae | Apium graveolens | 1 | Ag1G00348 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G008220, COCNU_09G003480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706386, gene-LOC103714028 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1560.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G28123, Ftri5G20943 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000867m.g.v1.0, Thhalv10025008m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g11400.v2.2, Sp7g16120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g063250.2N, BniB05g018370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0479, Ceq05G0979 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0509, Cgl05G0977 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g02150 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3603 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.698 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032566 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G38136 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2826, BH01.3166, CH01.3401 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0117570, gene-QOZ80_2BG0171230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0052470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012721 |
| Poaceae | Oryza coarctata | 2 | Oco19G010770, Oco20G010610 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g42110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G278900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503321 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G027230, Chr09G005710, Chr13G019190, Chr15G018410 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G331900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG028830, gene_TRIDC1BG032150 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G190200.2, TraesCS1B02G192300.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb024290_P001, Zm00001eb390580_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-54219 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12962, Zma_g15737 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.755, evm.TU.LG17.761 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g00570 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28408 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19421 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19028 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000034l.16 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018979 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15738 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22920 |
| Salicaceae | Populus euphratica | 3 | populus_peu26746, populus_peu26749, populus_peu34005 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132611342, gene-LOC132645874 |
| Solanaceae | Solanum chilense | 1 | SOLCI003111900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007861 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16255_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0369 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02390.v3.1 |