halophFGD

Basic Information

Locus ID: Ag1G00334

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: C1 domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	30424544	30426422	-	Ag1G00334

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.09	31,783.29 Da	45.27	75.68	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03107	C1 domain	74	120	3.9E-8	IPR004146
Pfam	PF03107	C1 domain	20	64	1.3E-8	IPR004146
SUPERFAMILY	SSF57889	Cysteine-rich domain	41	123	9.94E-18	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	30	139	6.0E-5	IPR013083
SMART	SM00249	PHD_3	37	98	7.5E-4	IPR001965

Best hit

Source	Best Hit ID	Description
TAIR	AT2G27660.1	Cysteine/Histidine-rich C1 domain family protein.
RefSeq	XP_017225996.1	PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS54-like [Daucus carota subsp. sativus]
TrEMBL	A0A175YEB8	C1_2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029599 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.134771	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.174564	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.095226	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.171254	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.060327	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.044994	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.285644	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.379164	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.694352	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.295441	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.351884	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.109661	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.098236	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.681666	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	6.779213	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.977905	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.897047		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.040016		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.150396		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.501313		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.531037		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.091905		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.294508		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.167287		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.876535		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.418114	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.109518	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.052821	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	88.032539	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	50.910671	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.174669	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.393919	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	43.49955	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.411988	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	16	jg1658, jg1662, jg18409, jg19166, jg25570, jg27056, jg27059 ... jg29072, jg29073, jg3327, jg3335, jg3337, jg4411, jg4412, jg4413, jg4414
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10865, gene_26544
Amaranthaceae	Atriplex hortensis	10	Ah009989, Ah014872, Ah014873, Ah014875, Ah014876, Ah014881 ... Ah014882, Ah014883, Ah014884, Ah039468
Amaranthaceae	Beta vulgaris	4	BVRB_4g086530, BVRB_8g191970, BVRB_8g191990, BVRB_9g224010
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19244, Sbi_jg24806, Sbi_jg37657, Sbi_jg8674
Amaranthaceae	Salicornia europaea	4	Seu_jg19934, Seu_jg4541, Seu_jg4542, Seu_jg5498
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005517, GOSA_00005518, GOSA_00022248
Amaranthaceae	Suaeda glauca	12	Sgl14904, Sgl20078, Sgl23251, Sgl28321, Sgl28409, Sgl42529 ... Sgl47258, Sgl47289, Sgl55675, Sgl55676, Sgl60893, Sgl60894
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000008298, gene:ENSEOMG00000009674 ... gene:ENSEOMG00000010787, gene:ENSEOMG00000017240, gene:ENSEOMG00000028822, gene:ENSEOMG00000031708, gene:ENSEOMG00000034079, gene:ENSEOMG00000038129, gene:ENSEOMG00000040163, gene:ENSEOMG00000044882, gene:ENSEOMG00000045175, gene:ENSEOMG00000046549, gene:ENSEOMG00000051970, gene:ENSEOMG00000052431
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.7BG0005350, CQ.Regalona.r1.7BG0005360 ... CQ.Regalona.r1.8AG0017470, CQ.Regalona.r1.8AG0017480, CQ.Regalona.r1.8AG0017490, CQ.Regalona.r1.8BG0018510, CQ.Regalona.r1.8BG0018530, CQ.Regalona.r1.8BG0018540, CQ.Regalona.r1.8BG0018550, CQ.Regalona.r1.8BG0018560, CQ.Regalona.r1.9AG0019140, CQ.Regalona.r1.9AG0019150
Anacardiaceae	Pistacia vera	5	pistato.v30270040, pistato.v30278570, pistato.v30284640 ... pistato.v30284660, pistato.v30287000
Apiaceae	Apium graveolens	20	Ag10G00389, Ag10G00391, Ag10G00392, Ag10G00399, Ag10G00421 ... Ag10G02578, Ag1G00334, Ag1G00335, Ag1G00336, Ag1G00338, Ag2G01450, Ag2G01456, Ag2G01457, Ag2G01458, Ag3G00980, Ag3G01471, Ag3G01883, Ag4G00571, Ag5G02612, Ag8G01457
Arecaceae	Cocos nucifera	1	COCNU_13G001440
Arecaceae	Phoenix dactylifera	1	gene-LOC103705770
Asteraceae	Flaveria trinervia	19	Ftri10G16841, Ftri10G16860, Ftri11G13890, Ftri11G17039 ... Ftri11G28579, Ftri12G03308, Ftri15G12588, Ftri18G17072, Ftri18G26964, Ftri3G16366, Ftri5G04321, Ftri5G14126, Ftri5G14735, Ftri5G17650, Ftri5G20353, Ftri5G24060, Ftri7G10464, Ftri7G33100, Ftri8G19319
Brassicaceae	Arabidopsis thaliana	14	AT2G17740.1, AT2G27660.1, AT2G28270.1, AT2G37780.1 ... AT2G37800.1, AT2G37810.1, AT2G37820.1, AT2G42060.1, AT2G44370.1, AT2G44380.1, AT2G44390.1, AT2G44400.1, AT5G40590.1, AT5G43520.1
Brassicaceae	Eutrema salsugineum	11	Thhalv10001601m.g.v1.0, Thhalv10001796m.g.v1.0 ... Thhalv10002650m.g.v1.0, Thhalv10016319m.g.v1.0, Thhalv10017138m.g.v1.0, Thhalv10017531m.g.v1.0, Thhalv10017725m.g.v1.0, Thhalv10017799m.g.v1.0, Thhalv10017859m.g.v1.0, Thhalv10017974m.g.v1.0, Thhalv10023934m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp4g10440.v2.2, Sp4g20150.v2.2, Sp4g24270.v2.2 ... Sp4g26430.v2.2, Sp4g26440.v2.2, Sp4g26460.v2.2, Sp4g26470.v2.2, SpUn0309_0020.v2.2, SpUn0309_0030.v2.2
Brassicaceae	Brassica nigra	17	BniB01g002060.2N, BniB01g002070.2N, BniB01g002080.2N ... BniB01g006990.2N, BniB01g007010.2N, BniB01g042310.2N, BniB02g042720.2N, BniB06g002770.2N, BniB06g002790.2N, BniB06g006720.2N, BniB06g006740.2N, BniB06g016530.2N, BniB06g059690.2N, BniB08g024020.2N, BniB08g024030.2N, BniB08g027360.2N, BniB08g028940.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0074
Casuarinaceae	Casuarina glauca	5	Cgl04G0660, Cgl04G2646, Cgl04G2691, Cgl08G0156, Cgl08G0467
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno04g17860, gene.Cymno04g17870, gene.Cymno04g17880 ... gene.Cymno04g17890, gene.Cymno14g07300, gene.Cymno15g07620, gene.Cymno15g07640
Hydrocharitaceae	Thalassia testudinum	10	gene.Thate01g02490, gene.Thate01g02500, gene.Thate01g02510 ... gene.Thate06g07790, gene.Thate06g07810, gene.Thate06g07830, gene.Thate08g03350, gene.Thate08g03370, gene.Thate08g03380, gene.Thate08g03410
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.184, evm.TU.LG02.2790, evm.TU.LG10.158
Plantaginaceae	Plantago ovata	7	Pov_00006427, Pov_00016870, Pov_00016871, Pov_00016873 ... Pov_00019961, Pov_00020721, Pov_00020722
Plumbaginaceae	Limonium bicolor	1	Lb4G23533
Poaceae	Echinochloa crus-galli	24	AH02.2175, AH03.3665, AH03.3666, AH03.3669, AH04.2163 ... AH04.2178, AH07.406, AH08.297, AH09.2071, BH01.2534, BH02.2255, BH04.2322, CH03.4111, CH03.4113, CH03.4192, CH03.4195, CH03.4197, CH03.4198, CH03.4201, CH03.4202, CH04.1711, CH04.2593, CH08.369, Contig192.219
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_3AG0238200, gene-QOZ80_7AG0576670 ... gene-QOZ80_7AG0576680, gene-QOZ80_7AG0576700, gene-QOZ80_7AG0576710, gene-QOZ80_7AG0576720, gene-QOZ80_7AG0576760, gene-QOZ80_7AG0576790, gene-QOZ80_7AG0576810, gene-QOZ80_7AG0576820, gene-QOZ80_7BG0608070, gene-QOZ80_7BG0608080, gene-QOZ80_7BG0608090, gene-QOZ80_7BG0608100, gene-QOZ80_7BG0608110, gene-QOZ80_7BG0608120, gene-QOZ80_7BG0608130, gene-QOZ80_7BG0608160, gene-QOZ80_9BG0713190
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0397980.1.CDS1 ... HORVU.MOREX.r3.5HG0535630.1.CDS1, HORVU.MOREX.r3.7HG0752090.1
Poaceae	Lolium multiflorum	5	gene-QYE76_037234, gene-QYE76_037237, gene-QYE76_043844 ... gene-QYE76_070016, gene-QYE76_070018
Poaceae	Oryza coarctata	5	Oco13G012400, Oco13G012410, Oco13G012430, Oco13G012440 ... Oco14G013140
Poaceae	Oryza sativa	10	LOC_Os07g41850.1, LOC_Os07g41860.1, LOC_Os07g41890.1 ... LOC_Os07g41910.1, LOC_Os07g41920.1, LOC_Os07g41930.1, LOC_Os07g41980.1, LOC_Os07g42030.1, LOC_Os07g42040.1, LOC_Os07g42070.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G346800, gene-BS78_02G346900 ... gene-BS78_02G347000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101622, Pt_Chr0404879, Pt_Chr0404880, Pt_Chr0404881
Poaceae	Sporobolus alterniflorus	12	Chr0G018840, Chr16G004030, Chr17G003710, Chr19G002470 ... Chr19G002480, Chr19G002490, Chr24G015450, Chr27G014830, Chr27G014840, Chr28G011410, Chr28G011420, Chr28G011430
Poaceae	Thinopyrum elongatum	3	Tel1E01G635500, Tel3E01G813900, Tel3E01G814000
Poaceae	Triticum aestivum	10	TraesCS1B02G416000.1, TraesCS3D02G503600.1.cds1 ... TraesCS3D02G503700.1.cds1, TraesCS4B02G254100.1.cds1, TraesCS7A02G530800.1.cds1, TraesCS7B02G493500.1, TraesCS7B02G494900.1, TraesCS7B02G496800.1.cds1, TraesCS7D02G545500.1, TraesCS7D02G545700.1
Poaceae	Zea mays	1	Zm00001eb401330_P001
Poaceae	Zoysia japonica	8	nbis-gene-32922, nbis-gene-32923, nbis-gene-402 ... nbis-gene-404, nbis-gene-405, nbis-gene-406, nbis-gene-48102, nbis-gene-52220
Poaceae	Zoysia macrostachya	10	Zma_g3501, Zma_g5533, Zma_g5534, Zma_g5537, Zma_g5538 ... Zma_g6835, Zma_g6836, Zma_g6837, Zma_g6838, Zma_g6839
Portulacaceae	Portulaca oleracea	15	evm.TU.LG01.2120, evm.TU.LG02.1500, evm.TU.LG02.2612 ... evm.TU.LG02.2613, evm.TU.LG02.2614, evm.TU.LG02.2615, evm.TU.LG09.504, evm.TU.LG14.1292, evm.TU.LG14.1294, evm.TU.LG23.835, evm.TU.LG23.836, evm.TU.LG23.837, evm.TU.LG23.838, evm.TU.LG23.839, evm.TU.LG23.840
Posidoniaceae	Posidonia oceanica	3	gene.Posoc06g15670, gene.Posoc07g15520, gene.Posoc07g15530
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.60400.11, evm.TU.Scaffold_15_RagTag.227 ... evm.TU.Scaffold_15_RagTag.228, evm.TU.Scaffold_1_RagTag.1249
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-26454, nbisL1-mrna-4059, nbisL1-mrna-6361 ... nbisL1-mrna-6366, nbisL1-mrna-7002, nbisL1-mrna-7004
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-11734, nbisL1-mrna-13286, nbisL1-mrna-14640 ... nbisL1-mrna-17985, nbisL1-mrna-3480, nbisL1-mrna-3481
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-17550, nbisL1-mrna-17551, nbisL1-mrna-17552 ... nbisL1-mrna-4191
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000001l.67, add.evm.TU.utg000001l.68 ... add.evm.TU.utg000009l.199
Rhizophoraceae	Kandelia obovata	1	Maker00004559
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-19767, nbisL1-mrna-21323, nbisL1-mrna-21324 ... nbisL1-mrna-21780
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-2718, nbisL1-mrna-2719, nbisL1-mrna-5622
Salicaceae	Populus euphratica	6	populus_peu02210, populus_peu20341, populus_peu20343 ... populus_peu26077, populus_peu29243, populus_peu29622
Solanaceae	Lycium barbarum	14	gene-LOC132599872, gene-LOC132599873, gene-LOC132599874 ... gene-LOC132601983, gene-LOC132607504, gene-LOC132615429, gene-LOC132625939, gene-LOC132630367, gene-LOC132632341, gene-LOC132633753, gene-LOC132644260, gene-LOC132644261, gene-LOC132645061, gene-LOC132645063
Solanaceae	Solanum chilense	13	SOLCI000112500, SOLCI000546800, SOLCI001874200 ... SOLCI002319900, SOLCI003012200, SOLCI004074600, SOLCI005784900, SOLCI006006800, SOLCI006006900, SOLCI006007000, SOLCI006007100, SOLCI006007200, SOLCI007367100
Solanaceae	Solanum pennellii	11	gene-LOC107014491, gene-LOC107015360, gene-LOC107021834 ... gene-LOC107023634, gene-LOC107024847, gene-LOC107027577, gene-LOC107028462, gene-LOC107029930, gene-LOC107030420, gene-LOC107032464, gene-LOC114073930
Tamaricaceae	Reaumuria soongarica	1	STRG.11566_chr02_-
Tamaricaceae	Tamarix chinensis	4	TC06G0759, TC07G0164, TC07G0165, TC07G0166