Basic Information
Locus ID:
Ag1G00328
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 29941350 | 29949771 | + | Ag1G00328 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 74,028.44 Da | 46.45 | 67.24 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13985 | STKc_GAK_like | 27 | 299 | 1.18108E-134 | - |
| Pfam | PF00069 | Protein kinase domain | 30 | 290 | 4.9E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 29 | 342 | 2.32E-60 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 11 | 301 | 1.6E-80 | - |
| SMART | SM00220 | serkin_6 | 28 | 292 | 2.2E-37 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 28 | 298 | 35.707443 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 153 | 165 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 353 | - | - |
| Coils | Coil | Coil | 474 | 522 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32850.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017227093.1 | PREDICTED: probable serine/threonine-protein kinase DDB_G0280111 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q86HW6 | Probable serine/threonine-protein kinase DDB_G0276461 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0276461 PE=3 SV=1 | 0 | |
| TrEMBL | A0A175YFP7 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029621 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.055679 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.887226 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.384209 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.442654 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.625149 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.823082 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.480659 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.429506 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.978012 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.16954 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.322132 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 35.237701 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.683437 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.500645 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 29.966137 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 35.016582 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.171942 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.274717 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.51963 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 28.121 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.341558 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 24.341038 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.668688 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 28.486053 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.646894 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.126369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.597408 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.680119 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.664068 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.457703 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.978692 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.07391 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.328917 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.646265 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.906884 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.502049 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.500148 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.224559 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.942858 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.087166 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.603901 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.284238 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.633183 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.473841 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.92498 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.593293 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.512817 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.174046 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.281937 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.058464 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29067, jg31559 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4393 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah001151, Ah019162, Ah019163 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g048210, BVRB_5g116400 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30478, Sbi_jg58774 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28645 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014994 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55282, Sgl60548 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000000419, gene:ENSEOMG00000005907 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0022220, CQ.Regalona.r1.5BG0023650 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30231030 |
| Apiaceae | Apium graveolens | 1 | Ag1G00328 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G007230, COCNU_01G011580 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103718429, gene-LOC103720255, gene-LOC120103889 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1458.V1.1, AsparagusV1_05.3089.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G20316, Ftri12G12142, Ftri5G04599 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32850.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016354m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15230.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g021970.2N, BniB08g020920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0526 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0557 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g08640 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0271s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2647 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.19 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031073 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34056 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.1402, AH07.2419, BH03.1529, BH03.1539, BH07.2234 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0135870, gene-QOZ80_2BG0191400 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0470980.1, HORVU.MOREX.r3.6HG0589870.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_004319, gene-QYE76_023358, gene-QYE76_023373 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G014040, Oco04G015610, Oco17G001550, Oco18G001490 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g37880.1, LOC_Os09g10720.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G098300, gene-BS78_04G179500, gene-BS78_K207500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204396, Pt_Chr0702817 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr07G017230, Chr09G012930, Chr10G003200, Chr13G008800 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G400600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG028440, gene_TRIDC5BG029830 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G173300.1, TraesCS5B02G170700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb094370_P001, Zm00001eb183460_P004 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18666, nbis-gene-28745, nbis-gene-29785 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13793, Zma_g16590, Zma_g29708 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.971, evm.TU.LG21.633 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g11070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.348 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18919 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7277 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6946 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.222 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010460 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8811 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20132 |
| Salicaceae | Populus euphratica | 4 | populus_peu02221, populus_peu02222, populus_peu35592 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644462 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008003 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11617 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1455 |
| Zosteraceae | Zostera marina | 1 | Zosma03g07510.v3.1 |