Basic Information
Locus ID:
Ag1G00307
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 24402929 | 24403980 | + | Ag1G00307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 33,673.17 Da | 36.23 | 81.05 | -0.29 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12650.1 | 0 | |
| RefSeq | XP_017224359.1 | PREDICTED: uncharacterized protein LOC108200649 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YF52 | Copper transporter OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.870299 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.567349 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.355795 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.417749 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.001649 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.029925 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.807405 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.078378 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.514697 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.455084 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.436801 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.584935 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.101682 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.654947 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.809874 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.707384 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.517412 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.432535 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.095402 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.63508 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.625971 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.762048 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.15253 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.265575 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.963476 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.292725 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.376046 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.216911 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.597121 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.240333 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.213344 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.349184 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 30.627609 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.132158 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 56.66494 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 24.238144 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.665275 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.172865 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.753027 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.71618 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.570376 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 45.804077 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.737465 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.941053 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.026646 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 44.145893 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.157248 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.85187 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.732354 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.329094 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26685 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8288 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g029500 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg22035 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15962 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008581 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62978, Sgl63077, Sgl67686 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000018700, gene:ENSEOMG00000050632 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0016750, CQ.Regalona.r1.2BG0018550 |
| Apiaceae | Apium graveolens | 2 | Ag1G00307, Ag2G02765 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012130 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711370, gene-LOC103720334 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G23640 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G12650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g10790.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g052440.2N, BniB02g029910.2N, BniB07g026210.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g05620 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.43 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030980 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.3234, BH07.3062, CH05.1311, CH07.3139 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0143460, gene-QOZ80_2BG0198860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0609800.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco03G019910 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g48680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G256000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203518, Pt_Chr0203545 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G003610, Chr09G021560, Chr15G005030 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G515000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG043040, gene_TRIDC6BG050460 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G281700.1.cds1, TraesCS6B02G310400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb189290_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22016, nbis-gene-8904 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14285, Zma_g17034 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2380, evm.TU.LG06.1130, evm.TU.LG16.1561 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g10320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.332 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18933 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6962 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000028l.85 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010851 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20253 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20147 |
| Salicaceae | Populus euphratica | 2 | populus_peu01846, populus_peu35974 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632885 |
| Solanaceae | Solanum chilense | 1 | SOLCI003997300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012543 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1999_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0017 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21500.v3.1 |