halophFGD

Basic Information

Locus ID: Ag1G00295

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Mitogen-activated protein kinase kinase kinase NPK1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	22971878	22977915	-	Ag1G00295

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	72,991.31 Da	47.39	68.46	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06606	STKc_MAPKKK	65	284	2.94103E-129	-
Pfam	PF00069	Protein kinase domain	171	284	8.7E-27	IPR000719
Pfam	PF00069	Protein kinase domain	67	168	1.2E-16	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	65	308	4.49E-59	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	169	287	9.7E-33	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	55	151	4.1E-23	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	66	300	27.721733	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	72	95	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	556	655	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	632	655	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	594	619	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	556	573	-	-
Coils	Coil	Coil	99	126	-	-
Coils	Coil	Coil	600	624	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K20606 (mitogen-activated protein kinase kinase kinase ANP1 [EC:2.7.11.25])

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06030.1	NPK1-related protein kinase 3. NPK1-related protein kinase 3
RefSeq	XP_017215378.1	PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q40541	Mitogen-activated protein kinase kinase kinase NPK1 OS=Nicotiana tabacum OX=4097 GN=NPK1 PE=1 SV=1
TrEMBL	A0A161ZMJ9	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024594 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.430485	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.441334	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.680899	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.066233	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.226292	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.15083	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.474703	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.165289	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.305464	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.070524	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	20.787046	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	19.288561	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.240257	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.989181	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.412648	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.240369	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.166408	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.374423	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.556921	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.498123	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.607291	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.621896	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.865605	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.001195	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.064672	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.220934	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.24395	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.5077	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	5.066795	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.160958		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.262024		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.298022		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.044962		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.076043		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.269896		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	11.800934	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.22372	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.154807	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.032338	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.156086	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.143541	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.224808	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.045068	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.397203	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.703692	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.317964	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.713485	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg12538, jg27918, jg27919, jg5721
Aizoaceae	Mesembryanthemum crystallinum	1	gene_2638
Amaranthaceae	Atriplex hortensis	1	Ah020245
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg5075, Sbi_jg6852
Amaranthaceae	Salicornia europaea	1	Seu_jg13018
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00003857
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000012989, gene:ENSEOMG00000031082 ... gene:ENSEOMG00000041160
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0013970, CQ.Regalona.r1.3BG0014120
Anacardiaceae	Pistacia vera	3	pistato.v30083370, pistato.v30084290, pistato.v30237190
Apiaceae	Apium graveolens	3	Ag1G00295, Ag1G00471, Ag4G01867
Arecaceae	Cocos nucifera	3	COCNU_01G009490, COCNU_11G008720, COCNU_11G008730
Arecaceae	Phoenix dactylifera	2	gene-LOC103710024, gene-LOC120111327
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.3205.V1.1
Asteraceae	Flaveria trinervia	3	Ftri4G18642, Ftri8G20477, FtriNA24065
Brassicaceae	Arabidopsis thaliana	4	AT1G09000.1, AT1G54960.1, AT2G43930.1, AT3G06030.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10006999m.g.v1.0, Thhalv10020261m.g.v1.0 ... Thhalv10023309m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g07610.v2.2, Sp3g04970.v2.2, SpUn0004_0010.v2.2
Brassicaceae	Brassica nigra	2	BniB01g057630.2N, BniB04g030790.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1213, Ceq09G1311
Casuarinaceae	Casuarina glauca	2	Cgl06G1266, Cgl09G1402
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g06530, gene.Cymno03g08750
Dunaliellaceae	Dunaliella salina	1	Dusal.0042s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g10800
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5419
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1383, evm.TU.LG03.2428, evm.TU.LG11.1087
Plantaginaceae	Plantago ovata	1	Pov_00021255
Plumbaginaceae	Limonium bicolor	2	Lb4G24020, Lb4G24038
Poaceae	Echinochloa crus-galli	6	AH03.1802, AH08.1561, BH03.1941, BH08.1395, CH03.2144 ... CH08.1758
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0534200, gene-QOZ80_6BG0487250 ... gene-QOZ80_8AG0631200, gene-QOZ80_8BG0659880
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0478260.1
Poaceae	Lolium multiflorum	3	gene-QYE76_004882, gene-QYE76_031941, gene-QYE76_045404
Poaceae	Oryza coarctata	4	Oco15G008440, Oco16G008000, Oco17G004020, Oco18G003990
Poaceae	Oryza sativa	2	LOC_Os08g32600.1, LOC_Os09g21510.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G172600, gene-BS78_07G137100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0300765, Pt_Chr0403231
Poaceae	Sporobolus alterniflorus	6	Chr10G010820, Chr11G011590, Chr14G013290, Chr20G006110 ... Chr21G012410, Chr29G005840
Poaceae	Thinopyrum elongatum	2	Tel5E01G335700, Tel6E01G350900
Poaceae	Triticum dicoccoides	4	gene_TRIDC4BG005790, gene_TRIDC5AG011490 ... gene_TRIDC5AG032410, gene_TRIDC5BG034210
Poaceae	Triticum aestivum	7	TraesCS3A02G016500.1, TraesCS5A02G200800.1 ... TraesCS5B02G199400.1, TraesCS5B02G476300.1, TraesCS5D02G206500.1, TraesCS6B02G232400.1, TraesCS7D02G398000.1
Poaceae	Zea mays	3	Zm00001eb099000_P001, Zm00001eb179120_P003 ... Zm00001eb311780_P001
Poaceae	Zoysia japonica	3	nbis-gene-19965, nbis-gene-45105, nbis-gene-45106
Poaceae	Zoysia macrostachya	4	Zma_g22997, Zma_g22998, Zma_g24070, Zma_g32463
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1706, evm.TU.LG06.1710, evm.TU.LG11.1064 ... evm.TU.LG11.1065
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g21280
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.152, evm.TU.Scaffold_3_RagTag.472 ... evm.TU.Scaffold_6_RagTag.715
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-15975, nbisL1-mrna-8101
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4146, nbisL1-mrna-5113
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-5226, nbisL1-mrna-596
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.432, evm.TU.utg000012l.107
Rhizophoraceae	Kandelia obovata	2	Maker00007446, Maker00011504
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-15341, nbisL1-mrna-6334, nbisL1-mrna-7849 ... nbisL1-mrna-7853
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-140, nbisL1-mrna-3444
Salicaceae	Populus euphratica	4	populus_peu07349, populus_peu13415, populus_peu15750 ... populus_peu21346
Solanaceae	Lycium barbarum	2	gene-LOC132644967, gene-LOC132645897
Solanaceae	Solanum chilense	2	SOLCI004394800, SOLCI004421000
Solanaceae	Solanum pennellii	2	gene-LOC107011843, gene-LOC107012462
Tamaricaceae	Reaumuria soongarica	1	gene_9354
Tamaricaceae	Tamarix chinensis	1	TC12G1420
Zosteraceae	Zostera marina	2	Zosma01g11790.v3.1, Zosma04g16450.v3.1