Basic Information
Locus ID:
Ag1G00294
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NEDD8-activating enzyme E1 catalytic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 22930252 | 22935245 | + | Ag1G00294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 49,909.79 Da | 32.30 | 93.58 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01488 | Uba3_RUB | 43 | 338 | 0.0 | - |
| Pfam | PF00899 | ThiF family | 33 | 334 | 5.4E-70 | IPR000594 |
| Pfam | PF08825 | E2 binding domain | 344 | 413 | 1.6E-19 | IPR014929 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 42 | 408 | 1.96E-104 | IPR035985 |
| Gene3D | G3DSA:3.10.290.20 | - | 341 | 420 | 1.7E-14 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 40 | 340 | 6.9E-66 | - |
| Gene3D | G3DSA:1.10.10.520 | Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 210 | 278 | 2.0E-32 | IPR023318 |
| SMART | SM01181 | E2_bind_2 | 343 | 434 | 3.8E-28 | IPR014929 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 208 | 216 | - | IPR033127 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19180.1 | E1 C-terminal related 1. Encodes a subunit of a RUB-activating enzyme analogous to the E1 ubiquitin-activating enzyme. ECR1 functions as a heterodimer with AXR1 to activate RUB, a ubiquitin-related protein. | 0 |
| RefSeq | XP_017215369.1 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Daucus carota subsp. sativus] | 0 |
| O65041 | NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=ECR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A175YRD4 | NEDD8-activating enzyme E1 catalytic subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027166 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.286864 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.673163 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.193254 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.053238 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.994601 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.582422 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.237279 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.062691 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.532349 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.033295 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.749326 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.452845 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.901664 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.059794 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.039418 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.681956 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.410442 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.611725 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.861168 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.132348 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.356329 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.303255 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.670936 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.933975 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.632065 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.134893 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.624763 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.762444 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.905992 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.809822 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.625309 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.018358 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.486134 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.925121 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.375911 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.202741 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.600761 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.038542 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.411021 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.021778 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.289921 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.302907 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.840721 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.029282 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.820789 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.627436 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.418556 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.896749 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.353683 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.005114 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12531, jg27923, jg27924, jg5598 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2660 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020195 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5036, Sbi_jg6808 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12995 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003834 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00384, Sgl05464 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013734, gene:ENSEOMG00000032048 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013810, CQ.Regalona.r1.3BG0013940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30237290 |
| Apiaceae | Apium graveolens | 2 | Ag1G00294, Ag8G01637 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G017250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712331 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2793.V1.1, AsparagusV1_07.1809.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G33310 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013467m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25195.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g043520.2N, BniB08g009720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1304 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1395 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0322s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g11780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1097 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021254 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33937 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.866, AH07.3303, BH02.1266, CH02.1391 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0004090, gene-QOZ80_1BG0052510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0256580.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018369, gene-QYE76_052375 |
| Poaceae | Oryza coarctata | 2 | Oco01G007640, Oco02G007940 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g16540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G116300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603771, Pt_Chr0603854 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G026990, Chr03G001250, Chr05G004700, Chr08G003890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G322400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG026070, gene_TRIDC3BG029760 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G187200.1, TraesCS3B02G216600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb332890_P002, Zm00001eb346970_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32526 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7341 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1695, evm.TU.LG11.1053 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g20760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.479 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6464 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6204 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.930 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012800 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6328 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2092 |
| Salicaceae | Populus euphratica | 3 | populus_peu07881, populus_peu21998, populus_peu35359 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644977 |
| Solanaceae | Solanum chilense | 1 | SOLCI006175800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007881 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8464 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1429 |