halophFGD

Basic Information

Locus ID: Ag1G00270

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Polyamine oxidase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	18213580	18220674	-	Ag1G00270

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.04	55,507.11 Da	39.26	89.44	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01593	Flavin containing amine oxidoreductase	16	123	2.1E-18	IPR002937
Pfam	PF01593	Flavin containing amine oxidoreductase	172	429	8.5E-51	IPR002937
SUPERFAMILY	SSF51905	FAD/NAD(P)-binding domain	7	435	1.41E-55	IPR036188
SUPERFAMILY	SSF54373	FAD-linked reductases, C-terminal domain	277	383	1.64E-27	-
Gene3D	G3DSA:3.90.660.10	-	89	390	1.9E-137	-
Gene3D	G3DSA:3.50.50.60	-	9	431	1.9E-137	IPR036188
PRINTS	PR00757	Flavin-containing amine oxidase signature	415	432	2.3E-10	IPR001613
PRINTS	PR00757	Flavin-containing amine oxidase signature	8	27	2.3E-10	IPR001613
PRINTS	PR00757	Flavin-containing amine oxidase signature	384	406	2.3E-10	IPR001613
Coils	Coil	Coil	111	135	-	-

Gene Ontology

Molecular Function:

GO:0016491 (oxidoreductase activity)

KEGG Pathway

KO Term:

K13366 (polyamine oxidase [EC:1.5.3.14 1.5.3.16 1.5.3.-])

Pathway:

ko00330 (Arginine and proline metabolism) map00330 (Arginine and proline metabolism) ko00410 (beta-Alanine metabolism) map00410 (beta-Alanine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R01914 (Spermidine + Oxygen + H2O <=> 1,3-Diaminopropane + 4-Aminobutyraldehyde + Hydrogen peroxide) R09076 (Spermine + Oxygen + H2O <=> Spermidine + 3-Aminopropanal + Hydrogen peroxide)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G13700.1	polyamine oxidase 1. Encodes a protein with polyamine oxidase activity. The mRNA of this gene is only expressed in very low amounts in the organs where it was detected (light-grown plants).
RefSeq	XP_017224530.1	PREDICTED: polyamine oxidase 1 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNA2	Polyamine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PAO1 PE=1 SV=1
TrEMBL	A0A175YEK5	Amino_oxidase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029692 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.608726	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.666892	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.232464	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.168609	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.084165	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.089809	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.911574	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	7.566337	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	8.394844	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.906678	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.373339	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.495914	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.363285	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.121619	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.091134	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.207119	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.1882	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.152878	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.049255	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.127474	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.69497	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.792208	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.160296	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.189321	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.105798	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.860352	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.25267		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.64932		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.524734		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.02919		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.054824		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.072978		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.412102	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.166603	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.602723	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.225466	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.030155	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.293014	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.268521	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.733561	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.140673	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.375056	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.493053	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg130, jg1597, jg29019
Aizoaceae	Mesembryanthemum crystallinum	7	gene_13664, gene_13665, gene_13666, gene_13667, gene_13668 ... gene_13669, gene_16411
Amaranthaceae	Atriplex hortensis	3	Ah000626, Ah000627, Ah035698
Amaranthaceae	Beta vulgaris	2	BVRB_2g029100, BVRB_7g169320
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg19617, Sbi_jg19618, Sbi_jg21743, Sbi_jg22078 ... Sbi_jg30513, Sbi_jg58732, Sbi_jg58733
Amaranthaceae	Salicornia europaea	3	Seu_jg16001, Seu_jg28601, Seu_jg28602
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008621, GOSA_00014958
Amaranthaceae	Suaeda glauca	9	Sgl03316, Sgl03620, Sgl08388, Sgl08740, Sgl25134, Sgl30327 ... Sgl30330, Sgl63021, Sgl67648
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000005689, gene:ENSEOMG00000017063 ... gene:ENSEOMG00000019200, gene:ENSEOMG00000022927, gene:ENSEOMG00000022984, gene:ENSEOMG00000024720, gene:ENSEOMG00000024784, gene:ENSEOMG00000025088, gene:ENSEOMG00000049685
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0017140, CQ.Regalona.r1.2BG0018910 ... CQ.Regalona.r1.5AG0022870, CQ.Regalona.r1.5AG0022880, CQ.Regalona.r1.5AG0022890, CQ.Regalona.r1.5BG0024290, CQ.Regalona.r1.5BG0024300
Anacardiaceae	Pistacia vera	1	pistato.v30230040
Apiaceae	Apium graveolens	1	Ag1G00270
Arecaceae	Cocos nucifera	1	COCNU_05G004220
Arecaceae	Phoenix dactylifera	2	gene-LOC103713355, gene-LOC120108588
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1060.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G22388, Ftri12G07201, FtriNA16082
Brassicaceae	Arabidopsis thaliana	1	AT5G13700.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10015601m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g30320.v2.2
Brassicaceae	Brassica nigra	1	BniB08g006460.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0776
Casuarinaceae	Casuarina glauca	1	Cgl05G0784
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g38470, gene.Thate02g38480
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2657
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.82
Plumbaginaceae	Limonium bicolor	5	Lb1G07774, Lb2G13332, Lb2G14041, Lb4G23621, Lb8G36436
Poaceae	Echinochloa crus-galli	8	AH01.4671, AH02.4470, BH01.2715, BH01.2717, BH02.4520 ... CH01.2894, CH02.4570, Contig181.94
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0237150, gene-QOZ80_3AG0237160 ... gene-QOZ80_3BG0290920, gene-QOZ80_3BG0290930, gene-QOZ80_3BG0290960
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.4HG0400080.1, HORVU.MOREX.r3.6HG0588230.1 ... HORVU.MOREX.r3.7HG0720280.1, HORVU.MOREX.r3.7HG0747940.1, HORVU.MOREX.r3.7HG0747970.1
Poaceae	Lolium multiflorum	8	gene-QYE76_018064, gene-QYE76_031821, gene-QYE76_035017 ... gene-QYE76_035018, gene-QYE76_039109, gene-QYE76_039111, gene-QYE76_039118, gene-QYE76_070176
Poaceae	Oryza coarctata	2	Oco05G005230, Oco20G003030
Poaceae	Oryza sativa	3	LOC_Os03g09810.1, LOC_Os09g20260.1, LOC_Os09g20284.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G243300, gene-BS78_01G449800
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101502, Pt_Chr0202686, Pt_Chr0404446
Poaceae	Sporobolus alterniflorus	5	Chr01G026260, Chr01G026270, Chr12G013140, Chr13G017100 ... Chr13G017110
Poaceae	Thinopyrum elongatum	6	Tel4E01G448600, Tel4E01G622900, Tel4E01G623000 ... Tel7E01G643100, Tel7E01G939400, Tel7E01G939500
Poaceae	Triticum dicoccoides	9	gene_TRIDC4AG005420, gene_TRIDC4BG046130 ... gene_TRIDC4BG062740, gene_TRIDC5AG077610, gene_TRIDC6AG057920, gene_TRIDC7AG052900, gene_TRIDC7AG075070, gene_TRIDC7BG045450, gene_TRIDC7BG071730
Poaceae	Triticum aestivum	11	TraesCS4A02G039600.1, TraesCS4B02G265900.1 ... TraesCS4B02G385300.1, TraesCS4D02G265800.1, TraesCS5A02G549600.1, TraesCS7A02G378800.1, TraesCS7A02G539200.1, TraesCS7B02G280700.1, TraesCS7B02G461800.1, TraesCS7D02G375700.1, TraesCS7D02G524900.1
Poaceae	Zea mays	3	Zm00001eb008280_P001, Zm00001eb008300_P001 ... Zm00001eb413630_P001
Poaceae	Zoysia japonica	6	nbis-gene-27518, nbis-gene-27522, nbis-gene-27523 ... nbis-gene-4212, nbis-gene-4213, nbis-gene-56215
Poaceae	Zoysia macrostachya	2	Zma_g15938, Zma_g4239
Portulacaceae	Portulaca oleracea	3	evm.TU.LG02.113, evm.TU.LG02.926, evm.TU.LG09.1044
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g06180, gene.Posoc03g06190, gene.Posoc03g06200
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1009, evm.TU.Scaffold_4_RagTag.480 ... evm.TU.Scaffold_7_RagTag.309, evm.TU.Scaffold_8_RagTag.1424
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-19415, nbisL1-mrna-28881, nbisL1-mrna-9244
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10250, nbisL1-mrna-13779, nbisL1-mrna-515 ... nbisL1-mrna-567, nbisL1-mrna-9115
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15242, nbisL1-mrna-1852, nbisL1-mrna-6986
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000010l.38, add.evm.TU.utg000010l.39 ... evm.TU.utg000008l.310, evm.TU.utg000018l.172, evm.TU.utg000028l.191
Rhizophoraceae	Kandelia obovata	3	Maker00000165, Maker00002823, Maker00010686
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-14596, nbisL1-mrna-755, nbisL1-mrna-8844 ... nbisL1-mrna-9511
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-1470, nbisL1-mrna-18790, nbisL1-mrna-20171 ... nbisL1-mrna-8645, nbisL1-mrna-8646
Salicaceae	Populus euphratica	4	populus_peu01889, populus_peu28622, populus_peu30080 ... populus_peu35924
Solanaceae	Lycium barbarum	1	gene-LOC132644760
Solanaceae	Solanum chilense	1	SOLCI002047700
Solanaceae	Solanum pennellii	1	gene-LOC107009669
Tamaricaceae	Reaumuria soongarica	2	gene_11741, gene_15977
Tamaricaceae	Tamarix chinensis	1	TC05G1302