Basic Information
Locus ID:
Ag1G00255
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
GFPT2
Description:
aminotransferase isomerizing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 17104046 | 17113080 | + | Ag1G00255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 74,695.39 Da | 40.68 | 98.21 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05009 | SIS_GlmS_GlmD_2 | 523 | 678 | 1.29209E-64 | IPR035490 |
| CDD | cd05008 | SIS_GlmS_GlmD_1 | 365 | 490 | 1.09856E-55 | IPR035466 |
| CDD | cd00714 | GFAT | 2 | 268 | 1.28111E-97 | - |
| Pfam | PF01380 | SIS domain | 531 | 662 | 1.5E-23 | IPR001347 |
| Pfam | PF13522 | Glutamine amidotransferase domain | 88 | 201 | 3.7E-14 | - |
| Pfam | PF01380 | SIS domain | 360 | 487 | 2.0E-31 | IPR001347 |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 2 | 277 | 7.72E-50 | IPR029055 |
| SUPERFAMILY | SSF53697 | SIS domain | 311 | 680 | 1.3E-95 | - |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 2 | 286 | 1.6E-66 | IPR029055 |
| Gene3D | G3DSA:3.40.50.10490 | - | 312 | 680 | 2.8E-146 | - |
| Gene3D | G3DSA:3.40.50.10490 | - | 516 | 665 | 2.8E-146 | - |
| TIGRFAM | TIGR01135 | glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) | 2 | 680 | 1.3E-173 | IPR005855 |
| ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 2 | 271 | 38.068985 | IPR017932 |
| ProSiteProfiles | PS51464 | SIS domain profile. | 527 | 670 | 20.514723 | IPR001347 |
| ProSiteProfiles | PS51464 | SIS domain profile. | 356 | 495 | 25.032026 | IPR001347 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24090.1 | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases. | 0 |
| RefSeq | XP_017223940.1 | PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 [Daucus carota subsp. sativus] | 0 |
| Q9LIP9 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Arabidopsis thaliana OX=3702 GN=GFAT1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S0QN24 | glutamine--fructose-6-phosphate transaminase (isomerizing) OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A003994 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.121721 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.680581 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.920959 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.660652 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.450048 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.946522 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.397575 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.635441 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.324581 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.753904 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.544623 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.10177 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.996199 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.06486 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.587351 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.691515 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.340601 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.259583 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.703294 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.063929 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.589289 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.369975 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.887933 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.4973 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.864958 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.505656 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.093649 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.432111 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.461401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.21704 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.584262 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.105778 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.111394 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.549704 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.878268 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.299006 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.912816 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.221178 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.974069 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.957329 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.932707 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.126771 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.849392 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.207639 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.050892 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.239132 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.361183 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.433175 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.369728 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.6458 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1584, jg29007, jg32253 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16408 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035683 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21728, Sbi_jg22091 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16015 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008633, GOSA_00008634 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63038, Sgl67660 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017131, gene:ENSEOMG00000017620 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0017260, CQ.Regalona.r1.2AG0017270 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30096340, pistato.v30096470 |
| Apiaceae | Apium graveolens | 1 | Ag1G00255 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705007, gene-LOC103709035 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.830.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G22610, Ftri12G14725 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002424m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g037190.2N, BniB03g025350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2885 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3034 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0953s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g09430 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1599 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014897 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23424 |
| Poaceae | Echinochloa crus-galli | 5 | AH04.164, AH07.1208, BH04.184, CH04.194, CH05.186 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0380200, gene-QOZ80_5BG0427280 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0356370.1, HORVU.MOREX.r3.4HG0356380.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003413, gene-QYE76_065176 |
| Poaceae | Oryza coarctata | 4 | Oco21G000440, Oco22G001190, Oco23G001210, Oco24G000550 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g03900.1, LOC_Os12g03720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G009700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0103696, Pt_Chr0103701, Pt_Chr0702959 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G021550, Chr06G023150, Chr16G008920, Chr17G007930 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G204100, Tel4E01G204200, Tel5E01G245600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029900, gene_TRIDC4BG020700 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G187100.2, TraesCS4B02G130800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163520_P001, Zm00001eb405240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25726 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24682 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1015, evm.TU.LG08.526, evm.TU.LG15.935 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1493 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12789, nbisL1-mrna-29309 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13699, nbisL1-mrna-20509 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22501 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.13, evm.TU.utg000010l.447 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000737, Maker00002355 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1159, nbisL1-mrna-2294 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20484, nbisL1-mrna-24230 |
| Salicaceae | Populus euphratica | 2 | populus_peu25610, populus_peu25615 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644800 |
| Solanaceae | Solanum chilense | 1 | SOLCI002469000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023341 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11745 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1312 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30050.v3.1 |