halophFGD

Basic Information

Locus ID: Ag1G00238

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: transport) protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	15550343	15564697	-	Ag1G00238

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.33	124,615.43 Da	52.59	74.68	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	254	292	0.13	IPR001680
Pfam	PF12931	Sec23-binding domain of Sec16	560	756	2.4E-9	IPR024298
SUPERFAMILY	SSF50978	WD40 repeat-like	13	336	3.66E-48	IPR036322
Gene3D	G3DSA:1.25.40.1030	-	351	776	2.7E-109	-
Gene3D	G3DSA:2.130.10.10	-	1	337	1.7E-107	IPR015943
Gene3D	G3DSA:1.20.940.10	Functional domain of the splicing factor Prp18	1031	1145	3.6E-29	-
SMART	SM00320	WD40_4	111	151	4.8E-6	IPR001680
SMART	SM00320	WD40_4	204	248	3.7	IPR001680
SMART	SM00320	WD40_4	161	201	2.7	IPR001680
SMART	SM00320	WD40_4	252	292	1.7E-7	IPR001680
SMART	SM00320	WD40_4	295	335	5.9	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	259	301	11.377324	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	118	152	10.34136	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	259	297	8.65015	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	118	152	8.702878	-
PRINTS	PR01217	Proline rich extensin signature	998	1015	4.8E-9	-
PRINTS	PR01217	Proline rich extensin signature	880	896	4.8E-9	-
PRINTS	PR01217	Proline rich extensin signature	969	985	4.8E-9	-
PRINTS	PR01217	Proline rich extensin signature	1020	1045	4.8E-9	-
PRINTS	PR01217	Proline rich extensin signature	859	871	4.8E-9	-
PRINTS	PR01217	Proline rich extensin signature	905	917	4.8E-9	-
MobiDBLite	mobidb-lite	consensus disorder prediction	950	969	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1003	1024	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1003	1038	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14005 (protein transport protein SEC31)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G63460.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_017226347.1	PREDICTED: protein transport protein SEC31 homolog B-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8L611	Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC31B PE=1 SV=1
TrEMBL	A0A175YEN5	Sec16_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031813 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	114.482185	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	82.732834	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	78.774071	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	84.486076	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	86.729546	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	69.790955	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	71.36393	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	62.5051	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	111.350739	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	112.183144	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	113.772621	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	118.183876	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	116.394615	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	99.074211	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	64.219681	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	85.877914	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	68.374847	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	91.731392	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	66.451416	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	85.188377	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	86.633537	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	76.822479	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	87.94252	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	81.740982	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	79.222145	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	102.61969	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	82.874229	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	71.170433	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	96.334488	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	17.54731		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	19.490509		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	14.863298		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	60.146198		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	41.805325		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	75.472031		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	25.309319		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	18.282207		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	21.26668		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	65.348511	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	39.705654	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	29.158081	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	63.025856	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	57.809231	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	94.142448	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	74.941765	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	63.277672	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	72.686584	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	76.173424	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	72.553421	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	65.63765	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg1581, jg26645, jg26646, jg29002
Aizoaceae	Mesembryanthemum crystallinum	1	gene_11259
Amaranthaceae	Atriplex hortensis	1	Ah035675
Amaranthaceae	Beta vulgaris	1	BVRB_2g028860
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg21723, Sbi_jg22096
Amaranthaceae	Salicornia europaea	1	Seu_jg16020
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00008639
Amaranthaceae	Suaeda glauca	3	Sgl62953, Sgl63043, Sgl67593
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000019227, gene:ENSEOMG00000022702 ... gene:ENSEOMG00000050797
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0017350, CQ.Regalona.r1.2BG0019120
Anacardiaceae	Pistacia vera	1	pistato.v30229650
Apiaceae	Apium graveolens	2	Ag1G00238, Ag9G00808
Arecaceae	Cocos nucifera	3	COCNU_02G017830, COCNU_12G004510, COCNU_16G001910
Arecaceae	Phoenix dactylifera	3	gene-LOC103701661, gene-LOC103716930, gene-LOC103719227
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.27.V1.1, AsparagusV1_05.408.V1.1 ... AsparagusV1_07.1668.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G08744, Ftri5G25825
Brassicaceae	Arabidopsis thaliana	2	AT1G18830.1, AT3G63460.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005758m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g00090.v2.2
Brassicaceae	Brassica nigra	3	BniB03g007880.2N, BniB06g052010.2N, BniB06g061010.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0814
Casuarinaceae	Casuarina glauca	1	Cgl05G0824
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g17140, gene.Cymno03g03310
Dunaliellaceae	Dunaliella salina	2	Dusal.0345s00008.v1.0, Dusal.0345s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g14190
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2660
Plantaginaceae	Plantago ovata	2	Pov_00014885, Pov_00039337
Plumbaginaceae	Limonium bicolor	2	Lb3G18905, Lb4G23426
Poaceae	Echinochloa crus-galli	7	AH01.3593, AH03.3933, BH01.3940, BH03.4224, CH01.4205 ... CH03.1940, CH07.271
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_7AG0580080, gene-QOZ80_7BG0611160
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0117400.1
Poaceae	Lolium multiflorum	1	gene-QYE76_039137
Poaceae	Oryza coarctata	2	Oco13G014660, Oco14G015500
Poaceae	Oryza sativa	1	LOC_Os07g46370.1
Poaceae	Paspalum vaginatum	1	gene-BS78_02G371700
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0305046, Pt_Chr0600144
Poaceae	Sporobolus alterniflorus	4	Chr0G003020, Chr19G000990, Chr24G013390, Chr27G016430
Poaceae	Thinopyrum elongatum	2	Tel2E01G273500, Tel6E01G603400
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG016340, gene_TRIDC2BG019970
Poaceae	Triticum aestivum	3	TraesCS2A02G132900.1, TraesCS2B02G156400.3 ... TraesCS2D02G135000.1
Poaceae	Zea mays	2	Zm00001eb110650_P001, Zm00001eb329590_P001
Poaceae	Zoysia japonica	2	nbis-gene-196, nbis-gene-33157
Poaceae	Zoysia macrostachya	2	Zma_g5704, Zma_g6995
Portulacaceae	Portulaca oleracea	2	evm.TU.LG07.1976, evm.TU.LG15.1169
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g04970
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.295, evm.TU.Scaffold_8_RagTag.1431
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19430, nbisL1-mrna-8525
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10913, nbisL1-mrna-20737, nbisL1-mrna-4704
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-15234, nbisL1-mrna-6999
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.163, evm.TU.utg000028l.179
Rhizophoraceae	Kandelia obovata	2	Maker00002813, Maker00010871
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-8855, nbisL1-mrna-9504
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-18802, nbisL1-mrna-20184
Salicaceae	Populus euphratica	2	populus_peu01914, populus_peu35899
Solanaceae	Lycium barbarum	1	gene-LOC132644816
Solanaceae	Solanum chilense	1	SOLCI005947600
Solanaceae	Solanum pennellii	1	gene-LOC107002682
Tamaricaceae	Reaumuria soongarica	2	STRG.2071_chr01_+, gene_12714
Tamaricaceae	Tamarix chinensis	2	TC01G0082, TC05G1318
Zosteraceae	Zostera marina	1	Zosma01g36490.v3.1