Basic Information
Locus ID:
Ag1G00233
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15209944 | 15212518 | + | Ag1G00233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 32,598.66 Da | 49.86 | 80.79 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 68 | 3.92E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 94 | 255 | 9.22E-14 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 57 | 3.6E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 74 | 282 | 2.7E-22 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 292 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G08980.1 | F-BOX WITH WD-40 2. Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response. | 0 |
| RefSeq | XP_017226241.1 | PREDICTED: F-box protein FBW2-like [Daucus carota subsp. sativus] | 0 |
| Q9ZPE4 | F-box protein FBW2 OS=Arabidopsis thaliana OX=3702 GN=FBW2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YG01 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031818 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.431675 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.11615 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.233968 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.37147 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.296798 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.288998 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.24153 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.64786 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.250046 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.783435 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.97663 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.755978 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.721233 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.729041 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.428019 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.526569 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.104931 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.217155 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.073427 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.068353 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.924724 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.121902 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.224031 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.194776 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.217838 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.092845 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.397409 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.637365 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.347941 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.161113 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31109, jg39527 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23334, gene_23726 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah023833, Ah027351 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g008680, BVRB_6g134840 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13780, Sbi_jg29353, Sbi_jg3581, Sbi_jg52136 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6374, Seu_jg9701 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000842, GOSA_00010293 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11808, Sgl11969, Sgl17298, Sgl33818, Sgl39182 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000000262, gene:ENSEOMG00000002343 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0011540, CQ.Regalona.r1.1BG0014430 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30041090, pistato.v30041200 |
| Apiaceae | Apium graveolens | 4 | Ag1G00233, Ag2G00586, Ag3G01012, Ag7G01457 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G006120, COCNU_13G003230, scaffold001727G000010 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696253, gene-LOC103707947, gene-LOC103713372 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.207.V1.1, AsparagusV1_06.1768.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G16149, Ftri11G02826 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G08980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028810m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g08650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g034940.2N, BniB08g053680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1319 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1421 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno01g09790, gene.Cymno01g09800, gene.Cymno04g09650 ... |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate03g06110, gene.Thate04g13130, gene.Thate04g13140 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10162, nbisL1-mrna-10631, nbisL1-mrna-8769 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1080 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020980 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15384 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3538, AH09.1155, BH07.3357, BH09.1258, CH07.3424 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0146380, gene-QOZ80_2BG0201890 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.2HG0171920.1, HORVU.MOREX.r3.3HG0321670.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025500, gene-QYE76_028738, gene-QYE76_044312 |
| Poaceae | Oryza coarctata | 6 | Oco03G022140, Oco04G022770, Oco07G007050, Oco08G006970 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g52130.5, LOC_Os04g37590.1, LOC_Os06g11630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G284800, gene-BS78_06G113700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302565, Pt_Chr0404848, Pt_Chr0404912, Pt_Chr0601106 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G001780, Chr09G019500, Chr13G003710, Chr15G003150 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G555000, Tel3E01G800700, Tel3E01G801800 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC2AG046050, gene_TRIDC2BG049000 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS2A02G316800.1, TraesCS2B02G334900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb132330_P001, Zm00001eb193970_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-21769, nbis-gene-37732, nbis-gene-8643 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14473, Zma_g17187, Zma_g19786 |
| Portulacaceae | Portulaca oleracea | 14 | evm.TU.LG03.1931, evm.TU.LG04.1806, evm.TU.LG04.1807 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g22860 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.980, evm.TU.Scaffold_8_RagTag.757 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18984, nbisL1-mrna-9487 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11983, nbisL1-mrna-17438 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20487, nbisL1-mrna-6810 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.746, evm.TU.utg000018l.513 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003285 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2993, nbisL1-mrna-8224 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20307, nbisL1-mrna-9966 |
| Salicaceae | Populus euphratica | 4 | populus_peu14589, populus_peu14591, populus_peu32245 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613532, gene-LOC132640521, gene-LOC132644834 |
| Solanaceae | Solanum chilense | 2 | SOLCI002664500, SOLCI006159000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005006, gene-LOC107008531 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.10074_chr06_-, STRG.16581_chr06_+, STRG.26408_chr11_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1601, TC09G0040 |
| Zosteraceae | Zostera marina | 2 | Zosma03g18830.v3.1, Zosma05g30140.v3.1 |