Basic Information
Locus ID:
Ag1G00194
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SKIP5
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12412835 | 12417154 | - | Ag1G00194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 27,570.59 Da | 46.43 | 96.73 | 0.05 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54480.1 | SKP1/ASK-interacting protein 5. Encodes an SKP1 interacting partner (SKIP5). | 0 |
| RefSeq | XP_017225528.1 | PREDICTED: F-box protein SKIP5 [Daucus carota subsp. sativus] | 0 |
| Q94FT2 | F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YF48 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.437118 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.474092 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.951641 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.7603 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.696969 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.765141 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.300354 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.588024 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.857803 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.249561 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.251904 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.690508 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.307577 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.375286 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.154529 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.55903 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.584713 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.772622 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.051952 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.148327 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.038598 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.796995 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.890745 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.243095 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.408983 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.321877 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.21223 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.381846 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.428622 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.362031 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.518314 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.176401 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.992759 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.718048 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.508186 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.775137 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.253758 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.024581 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.111699 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.697496 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.70874 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.767355 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.770148 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.135338 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.528843 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.258183 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.531797 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.977915 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.739855 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 35.342552 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29881 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17176 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032404 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29952, Sbi_jg43415 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18485 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004247 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66272, Sgl70590 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000012626, gene:ENSEOMG00000021218 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2BG0005850 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166000 |
| Apiaceae | Apium graveolens | 1 | Ag1G00194 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724053 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1620.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | FtriNA14239, FtriNA19948 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54480.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010628m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07940.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065370.2N, BniB08g068670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0864 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0879 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g03150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0300s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1974 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039369 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02342 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3959, BH03.4263, CH07.234 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0580270, gene-QOZ80_7BG0611360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0116800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039066 |
| Poaceae | Oryza coarctata | 2 | Oco13G014850, Oco14G015660 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g46555.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G377800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305079 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G003100, Chr0G020900, Chr19G000880, Chr24G013250 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G269000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG015900, gene_TRIDC2BG019190 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G129100.1, TraesCS2B02G151200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb329830_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33174 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5717 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.372, evm.TU.LG17.367 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g05460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28442 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21082 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14046 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.295 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018744 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14964 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22947 |
| Salicaceae | Populus euphratica | 1 | populus_peu04268 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613577 |
| Solanaceae | Solanum chilense | 1 | SOLCI003689000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005079 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13697_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3884 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36250.v3.1 |