Basic Information
Locus ID:
Ag1G00190
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Flowering time control protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12125188 | 12147059 | - | Ag1G00190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 85,975.64 Da | 48.63 | 53.28 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 194 | 475 | 8.12549E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 263 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 348 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 275 | 306 | 8.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 390 | 4.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 396 | 432 | 7.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 443 | 475 | 3.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 186 | 475 | 3.4E-76 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 349 | 484 | 1.2E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 132 | 348 | 2.9E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 309 | 348 | 1.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 390 | 1.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 178 | 222 | 0.041 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 433 | 4.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 437 | 476 | 4.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 3.4E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 357 | 16.958164 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 316 | 353 | 12.789221 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 400 | 432 | 9.493783 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 274 | 306 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 222 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 264 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 444 | 475 | 10.15287 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 358 | 399 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 444 | 475 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 274 | 315 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 358 | 392 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 400 | 432 | 11.343905 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 264 | 8.940149 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 335 | 349 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 463 | 477 | 6.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 293 | 307 | 6.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 335 | 349 | 6.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 769 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13480.3 | - | 0 |
| RefSeq | XP_017225520.1 | PREDICTED: flowering time control protein FY [Daucus carota subsp. sativus] | 0 |
| Q6NLV4 | Flowering time control protein FY OS=Arabidopsis thaliana OX=3702 GN=FY PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6QKK6 | Flowering time control protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc17019 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.544054 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.339214 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.973679 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.828196 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.781288 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.911352 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.898005 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 26.408731 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.80312 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 38.539566 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 36.31081 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 41.192043 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.211426 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 33.936142 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.939701 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.384896 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.430611 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.129775 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.131575 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.406796 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.233168 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.887444 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.166691 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.137077 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.789749 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.485086 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.887826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.841404 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.580443 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.147816 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.423532 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.111789 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 24.851631 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.101471 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 36.304604 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.93996 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.200235 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.062321 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.303968 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.848626 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.541245 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.363256 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.67905 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.348261 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.307384 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.786757 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.705053 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.509945 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.153507 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.314053 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28976 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17172 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032394 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29958, Sbi_jg43421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004240 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl14343, Sgl14344, Sgl19510, Sgl66259, Sgl66263, Sgl70574 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015624, gene:ENSEOMG00000021875 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0004450, CQ.Regalona.r1.2BG0005670 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165980 |
| Apiaceae | Apium graveolens | 1 | Ag1G00190 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G008240, COCNU_16G002290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714650, gene-LOC103722450 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.77.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G16520 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13480.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012890m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30540.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g024850.2N, BniB08g006340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0874 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0886 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0510s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3166, nbisL1-mrna-4862 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1980 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014814 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02357 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4521, BH02.4571, CH02.4622 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0046570, gene-QOZ80_3BG0295310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0495130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058078 |
| Poaceae | Oryza coarctata | 2 | Oco01G029980, Oco02G031140 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g72220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G401000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403030 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G000200, Chr02G000990, Chr05G033670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G469300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG043980, gene_TRIDC5BG047980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G293600.2, TraesCS5B02G292800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb140970_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12611, nbis-gene-26152, nbis-gene-26153 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10909, Zma_g8457 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1077, evm.TU.LG25.286 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.55 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7151 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19600 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14506 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.346 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009963 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-241 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22077 |
| Salicaceae | Populus euphratica | 2 | populus_peu04256, populus_peu35076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635775 |
| Solanaceae | Solanum chilense | 1 | SOLCI002121600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028734 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13509 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3886 |
| Zosteraceae | Zostera marina | 1 | Zosma06g29860.v3.1 |