Basic Information
Locus ID:
Ag1G00172
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
PHOT2
Description:
Phototropin-2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11150627 | 11167666 | - | Ag1G00172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 100,335.38 Da | 42.09 | 77.26 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05574 | STKc_phototropin_like | 550 | 860 | 0.0 | - |
| CDD | cd00130 | PAS | 377 | 465 | 6.60254E-11 | IPR000014 |
| CDD | cd00130 | PAS | 105 | 194 | 1.65556E-9 | IPR000014 |
| Pfam | PF00069 | Protein kinase domain | 553 | 837 | 3.1E-58 | IPR000719 |
| Pfam | PF13426 | PAS domain | 373 | 465 | 3.1E-21 | IPR000014 |
| Pfam | PF13426 | PAS domain | 99 | 195 | 5.3E-20 | IPR000014 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 523 | 858 | 3.37E-81 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 99 | 195 | 1.01E-24 | IPR035965 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 369 | 465 | 1.19E-24 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 339 | 503 | 1.1E-57 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 635 | 847 | 4.3E-94 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 550 | 634 | 4.3E-94 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 92 | 247 | 1.1E-47 | - |
| SMART | SM00220 | serkin_6 | 551 | 837 | 4.2E-88 | IPR000719 |
| SMART | SM00091 | pas_2 | 352 | 421 | 0.68 | IPR000014 |
| SMART | SM00091 | pas_2 | 80 | 149 | 0.0072 | IPR000014 |
| SMART | SM00086 | pac_2 | 427 | 469 | 2.9E-7 | IPR001610 |
| SMART | SM00086 | pac_2 | 155 | 197 | 1.1E-4 | IPR001610 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 377 | 465 | 2.0E-11 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 104 | 195 | 2.2E-11 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 350 | 423 | 10.875991 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 78 | 151 | 13.193722 | IPR000014 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 424 | 478 | 11.996047 | IPR000700 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 551 | 837 | 44.739071 | IPR000719 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 152 | 206 | 10.906317 | IPR000700 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 672 | 684 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 557 | 580 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 348 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58140.1 | phototropin 2. Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light. | 0 |
| RefSeq | XP_017226688.1 | PREDICTED: phototropin-2 [Daucus carota subsp. sativus] | 0 |
| P93025 | Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A126X273 | Putative LOV domain-containing protein OS=Angelica archangelica OX=40949 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.083259 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.888726 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.140326 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.466841 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.233828 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.05262 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.083929 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.720779 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 37.716305 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 39.727844 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 42.211025 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.394051 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.667835 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.335184 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 61.939281 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 58.05714 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 45.376518 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 111.289993 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 94.774727 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 99.045242 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 145.495575 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.250124 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.010628 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.424591 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 28.676615 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 115.238388 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 70.567062 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 106.552597 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 105.564995 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 139.272705 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 180.71666 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 121.215172 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 168.447464 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 58.77095 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 178.329834 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 72.067421 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 121.567703 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 92.742302 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 108.302315 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 99.276482 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 78.232964 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.863236 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 28.863018 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 78.718834 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 69.628685 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.719976 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 64.281998 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.659085 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.530289 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.421587 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26617, jg37943 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26579, gene_5952 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009900, Ah028129 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174900, BVRB_9g216030 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11175, Sbi_jg1878, Sbi_jg34642, Sbi_jg46151 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20490, Seu_jg2880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003095, GOSA_00005464 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl55721, Sgl60935, Sgl73166, Sgl76710 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005298, gene:ENSEOMG00000012984 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0001910, CQ.Regalona.r1.7BG0004840 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30059470, pistato.v30107130 |
| Apiaceae | Apium graveolens | 4 | Ag10G00514, Ag11G04260, Ag1G00172, Ag5G00026 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G001240 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702839, gene-LOC103711883, gene-LOC120104603 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1579.V1.1, AsparagusV1_08.3443.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G34116, Ftri12G17732, Ftri18G22640 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G45780.1, AT5G58140.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002386m.g.v1.0, Thhalv10012609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g15740.v2.2, Sp6g19820.v2.2, SpUn0096_0010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g037570.2N, BniB06g024850.2N, BniB08g013390.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G2377, Ceq09G0011 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2568, Cgl09G0012 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g05450, gene.Cymno05g16010, gene.Cymno06g08120 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g33280, gene.Thate07g07900 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11050, nbisL1-mrna-585 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.475, evm.TU.LG09.993 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025324, Pov_00037016 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G00638, Lb3G18144, Lb3G19266, Lb4G21672 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.89, AH09.474, BH04.19, BH09.519, CH04.17, CH09.569 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0323350, gene-QOZ80_4BG0352460 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0159250.1, HORVU.MOREX.r3.5HG0467030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003830, gene-QYE76_043366 |
| Poaceae | Oryza coarctata | 3 | Oco07G002660, Oco08G002960, Ocoptg000061lG000070 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g23890.2, LOC_Os11g01140.1, LOC_Os12g01140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G001200, gene-BS78_07G084800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303144, Pt_Chr0303196, Pt_Chr0404815, Pt_Chr0705170 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G022560, Chr21G008710, Chr23G016080, Chr26G003850 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G491700, Tel5E01G270700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG039210, gene_TRIDC2BG042220 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G272400.1, TraesCS2B02G290500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042710_P003, Zm00001eb163120_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25863, nbis-gene-8070 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g21060, Zma_g24578 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1540, evm.TU.LG09.342, evm.TU.LG19.1382 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g35500, gene.Posoc02g23820, gene.Posoc03g11970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.779, evm.TU.Scaffold_1_RagTag.1044 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30259, nbisL1-mrna-6560 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13434, nbisL1-mrna-19704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16150, nbisL1-mrna-21161 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.455, evm.TU.utg000016l.887 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015254 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11071, nbisL1-mrna-4374 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15027, nbisL1-mrna-21778 |
| Salicaceae | Populus euphratica | 4 | populus_peu01127, populus_peu08384, populus_peu08385 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600827, gene-LOC132645257 |
| Solanaceae | Solanum chilense | 2 | SOLCI002567500, SOLCI003173700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003486, gene-LOC107004580 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4869_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0298, TC11G0028 |
| Zosteraceae | Zostera marina | 2 | Zosma02g21400.v3.1, Zosma04g17980.v3.1 |