Basic Information
Locus ID:
Ag1G00164
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10749873 | 10754706 | - | Ag1G00164 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 72,706.40 Da | 59.12 | 60.23 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF46934 | UBA-like | 195 | 234 | 3.69E-8 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 152 | 243 | 3.5E-9 | - |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 180 | 232 | 10.016698 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 101 | - | - |
| Coils | Coil | Coil | 270 | 290 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26920.1 | Ubiquitin-associated/translation elongation factor EF1B protein. | 0 |
| RefSeq | XP_017226945.1 | PREDICTED: uncharacterized protein LOC108202871 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YEU2 | UBA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 53.522453 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 37.045357 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 39.301601 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 43.930271 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 40.118423 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 41.640114 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 36.641262 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 43.727417 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 47.932533 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 48.001102 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 43.490765 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 65.685829 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 53.735458 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 53.191166 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.399052 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.779587 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.332945 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.657185 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.273699 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.066448 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.514389 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 24.860245 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.863533 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.721453 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.429754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.743216 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.588865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.278353 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.629324 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.757378 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.889635 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.938169 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 35.130558 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 42.285755 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.102215 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 31.628185 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 25.879456 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 30.131958 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.89418 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.53916 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.48642 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.794926 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.74333 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 27.282387 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 27.681337 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 30.701204 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.022987 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 41.313766 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 42.309429 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 40.10836 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16375, jg35636, jg37673, jg8489 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10163 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005118 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g074310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17365, Sbi_jg62013 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg630 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015521 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24309, Sgl29485 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009107, gene:ENSEOMG00000029570 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002650, CQ.Regalona.r1.4BG0002770 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168540 |
| Apiaceae | Apium graveolens | 1 | Ag1G00164 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G016860, COCNU_16G000920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710964, gene-LOC103721664 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1907.V1.1, AsparagusV1_08.1791.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G21667, Ftri7G16648 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26920.1, AT5G12120.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001930m.g.v1.0, Thhalv10012987m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g08440.v2.2, Sp6g31510.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g049980.2N, BniB05g025520.2N, BniB08g005710.2N |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0946, Cgl05G1678 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04510 |
| Hydrocharitaceae | Thalassia testudinum | 7 | gene.Thate01g28630, gene.Thate02g11120, gene.Thate02g15760 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-397 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2052 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00012236, Pov_00017123, Pov_00026667 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0373470, gene-QOZ80_5BG0420740 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0062470.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_048227 |
| Poaceae | Oryza coarctata | 2 | Oco09G008990, Oco10G009610 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G142200 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G020680, Chr12G017340, Chr18G009100, Chr22G008530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G423900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG038220, gene_TRIDC1BG043470 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G255900.1.cds1, TraesCS1B02G266600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287870_P001, Zm00001eb349540_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-13913, nbis-gene-23847, nbis-gene-30126 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27220, Zma_g28233 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1654, evm.TU.LG20.229 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g09590, gene.Posoc06g22250 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.120 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16862, nbisL1-mrna-7212 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-13044, nbisL1-mrna-14499, nbisL1-mrna-16450 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14461, nbisL1-mrna-17308, nbisL1-mrna-17309 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000005l.130, add.evm.TU.utg000025l.77 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00010224, Maker00012304, Maker00012375 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-16890, nbisL1-mrna-20149, nbisL1-mrna-8609 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-22005, nbisL1-mrna-23012, nbisL1-mrna-23014 |
| Salicaceae | Populus euphratica | 4 | populus_peu04194, populus_peu11997, populus_peu35017 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600762, gene-LOC132600763 |
| Solanaceae | Solanum chilense | 2 | SOLCI000260600, SOLCI004576800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005124, gene-LOC107023304 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10519_chr07_+, gene_4727 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1616, TC02G2957 |
| Zosteraceae | Zostera marina | 1 | Zosma03g29910.v3.1 |