Basic Information
Locus ID:
Ag1G00147
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
conserved protein UCP030365
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9865238 | 9869413 | + | Ag1G00147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 60,174.34 Da | 51.21 | 73.59 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 450 | 477 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05240.2 | - | 0 |
| RefSeq | XP_017225800.1 | PREDICTED: uncharacterized protein LOC108201961 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YEU5 | WPP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029743 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.254977 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.127664 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.135366 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.368943 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.575359 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.754653 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.768074 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.653071 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.878335 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.614554 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.989668 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.846223 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.44581 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.201073 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.00756 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.442334 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.340801 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.711373 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.105456 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.953849 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.506191 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.895589 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.990199 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.865148 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.129128 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.159965 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.161116 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.154476 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.522354 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.043708 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.312789 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.027982 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.021697 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.330044 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.355168 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.113405 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.479075 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.204926 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.507987 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.948085 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10078, jg14190, jg34082, jg41099 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24381 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032097 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g042420, BVRB_3g062900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30125, Sbi_jg43579 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18323 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004086 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl26187, Sgl66074, Sgl70389 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000019484, gene:ENSEOMG00000052109 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0002880, CQ.Regalona.r1.2BG0004060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178050 |
| Apiaceae | Apium graveolens | 4 | Ag10G02719, Ag1G00147, Ag2G02653, Ag3G01355 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G003730, contig69549873G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708983, gene-LOC103721535 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.545.V1.1, AsparagusV1_07.528.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G25525, Ftri9G15657 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G40630.1, AT5G05240.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013224m.g.v1.0, Thhalv10016481m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g22960.v2.2, Sp6g37590.v2.2, SpUn1366_0010.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g004730.2N, BniB02g055380.2N, BniB05g029230.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0026 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0028 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g18260, gene.Cymno03g01870 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1864 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1694 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011618 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06571 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.291, BH07.385, CH03.4530 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0100770, gene-QOZ80_2BG0154030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0554280.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G001800, Oco04G001670 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G028300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201421 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G035340, Chr0G011460, Chr0G011790, Chr15G026670 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G218500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG012190, gene_TRIDC6BG017510 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G095400.1, TraesCS6B02G123400.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb180710_P001, Zm00001eb191010_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33793 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12149, Zma_g14902 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.467, evm.TU.LG10.67, evm.TU.LG17.62 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g08690 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.299, evm.TU.Scaffold_4_RagTag.879 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14123, nbisL1-mrna-27461 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12670, nbisL1-mrna-13885 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14268, nbisL1-mrna-1515 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.177, evm.TU.utg000008l.563 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001171, Maker00010210 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14343, nbisL1-mrna-422 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18915, nbisL1-mrna-19357 |
| Salicaceae | Populus euphratica | 1 | populus_peu19156 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611251 |
| Solanaceae | Solanum chilense | 1 | SOLCI003655800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021085 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24182_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4494 |
| Zosteraceae | Zostera marina | 2 | Zosma01g36330.v3.1, Zosma01g36340.v3.1 |