Basic Information
Locus ID:
Ag1G00135
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
arabidillo
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9075618 | 9088158 | + | Ag1G00135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 98,254.73 Da | 39.18 | 99.92 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 631 | 673 | 1.8E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 423 | 457 | 2.4E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 678 | 714 | 5.8E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 545 | 585 | 7.8E-7 | IPR000225 |
| Pfam | PF12937 | F-box-like | 41 | 86 | 3.1E-7 | IPR001810 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 501 | 543 | 3.0E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 464 | 498 | 3.2E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 599 | 629 | 3.0E-8 | IPR000225 |
| SUPERFAMILY | SSF81383 | F-box domain | 34 | 95 | 1.44E-11 | IPR036047 |
| SUPERFAMILY | SSF48371 | ARM repeat | 360 | 746 | 5.76E-49 | IPR016024 |
| SUPERFAMILY | SSF52047 | RNI-like | 82 | 293 | 3.92E-18 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 591 | 680 | 2.3E-22 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 681 | 775 | 5.5E-16 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 525 | 590 | 1.2E-12 | IPR011989 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 305 | 2.3E-37 | IPR032675 |
| Gene3D | G3DSA:1.25.10.10 | - | 383 | 524 | 1.2E-21 | IPR011989 |
| SMART | SM00185 | arm_5 | 675 | 715 | 7.1E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 500 | 543 | 4.1E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 631 | 674 | 0.011 | IPR000225 |
| SMART | SM00185 | arm_5 | 418 | 458 | 11.0 | IPR000225 |
| SMART | SM00256 | fbox_2 | 43 | 83 | 7.4E-6 | IPR001810 |
| SMART | SM00185 | arm_5 | 716 | 757 | 3.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 459 | 499 | 3.9 | IPR000225 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 72.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 252 | 276 | 450.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 178 | 203 | 0.13 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 204 | 229 | 640.0 | IPR006553 |
| SMART | SM00185 | arm_5 | 544 | 585 | 2.7E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 589 | 630 | 1.8E-5 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 511 | 556 | 11.0774 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 686 | 728 | 12.9674 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 555 | 586 | 8.7324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 601 | 643 | 15.6274 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 429 | 471 | 9.3274 | IPR000225 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 37 | 83 | 8.861604 | IPR001810 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 642 | 687 | 11.2174 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 470 | 512 | 10.0974 | IPR000225 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44900.1 | ARABIDILLO-1. ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings. | 0 |
| RefSeq | XP_017226678.1 | PREDICTED: protein ARABIDILLO 1-like [Daucus carota subsp. sativus] | 0 |
| O22161 | Protein ARABIDILLO 1 OS=Arabidopsis thaliana OX=3702 GN=FBX5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YEV7 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029753 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.327488 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.860437 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.794367 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.001741 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.893618 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.558496 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.620193 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.428354 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.338261 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 42.396095 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.715267 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 43.96188 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 42.877151 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 40.859737 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 22.254143 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.968151 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.87891 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.098087 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.279026 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.942743 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.918337 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.912542 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.955738 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.112431 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.06407 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.487358 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.7411 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.902802 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.061657 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.640638 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.327344 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.301528 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.911617 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.980068 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.036577 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.774152 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.065487 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.761965 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.745913 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.260637 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.220461 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 43.659306 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 40.553776 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 56.461586 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 42.682434 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 40.317928 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.19305 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.506895 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.898685 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.995693 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg1772, jg26783, jg26784, jg29182, jg29716, jg29721 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1300 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023302 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29178, Sbi_jg3400 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6549 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000173 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11401, Sgl16777 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014688, gene:ENSEOMG00000035750 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0007280, CQ.Regalona.r1.2BG0010720 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30001820, pistato.v30187980 |
| Apiaceae | Apium graveolens | 3 | Ag1G00135, Ag5G01184, Ag5G01185 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005060, COCNU_10G003570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704656, gene-LOC103713583 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.810.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G24367, Ftri7G10964 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G44900.1, AT3G60350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001300m.g.v1.0, Thhalv10005776m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp4g26970.v2.2, Sp5g02870.v2.2, Sp5g02880.v2.2 ... |
| Brassicaceae | Brassica nigra | 8 | BniB01g001790.2N, BniB05g044350.2N, BniB06g062610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1069 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1085 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g02140, gene.Cymno11g09100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2676 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.77 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017049, Pov_00017050 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37100, Lb5G28093 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2896, BH01.3234, CH01.3466 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116820, gene-QOZ80_2BG0170540 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0057680.1, HORVU.MOREX.r3.4HG0416450.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_012700, gene-QYE76_071567, gene-QYE76_071568 ... |
| Poaceae | Oryza coarctata | 2 | Oco19G010330, Oco20G010150 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G285000 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0101058, Pt_Chr0101167, Pt_Chr0503221, Pt_Chr0503266 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005060, Chr13G019750 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G369100, Tel4E01G609100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG032880, gene_TRIDC1BG038290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G217900.1, TraesCS1B02G231300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb023660_P001, Zm00001eb269460_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-36370, nbis-gene-38014, nbis-gene-38015 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12920, Zma_g15691 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1003 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g01850 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1237, evm.TU.Scaffold_4_RagTag.253 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-12427, nbisL1-mrna-12539, nbisL1-mrna-29097 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10521, nbisL1-mrna-18627, nbisL1-mrna-6877 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12807, nbisL1-mrna-15182, nbisL1-mrna-2042 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.161, evm.TU.utg000010l.278 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001180, Maker00003741 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2438, nbisL1-mrna-9469 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18860, nbisL1-mrna-22778, nbisL1-mrna-6164 |
| Salicaceae | Populus euphratica | 2 | populus_peu03806, populus_peu31886 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645782 |
| Solanaceae | Solanum chilense | 1 | SOLCI002632500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005143 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3240 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0052, TC10G2244 |
| Zosteraceae | Zostera marina | 2 | Zosma03g36140.v3.1, Zosma03g36200.v3.1 |