halophFGD

Basic Information

Locus ID: Ag1G00114

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	7707632	7716732	-	Ag1G00114

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.02	82,446.96 Da	40.14	86.06	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04097	mtEFG1_C	649	726	1.50623E-43	IPR035649
CDD	cd01434	EFG_mtEFG1_IV	527	644	3.35479E-62	IPR005517
CDD	cd04091	mtEFG1_II_like	356	436	3.30161E-49	-
CDD	cd16262	EFG_III	449	524	5.17419E-38	IPR009022
CDD	cd01886	EF-G	57	329	3.84059E-179	-
Pfam	PF00679	Elongation factor G C-terminus	646	732	1.2E-26	IPR000640
Pfam	PF03764	Elongation factor G, domain IV	523	643	3.0E-38	IPR005517
Pfam	PF03144	Elongation factor Tu domain 2	369	435	1.5E-15	IPR004161
Pfam	PF00009	Elongation factor Tu GTP binding domain	54	327	5.9E-61	IPR000795
Pfam	PF14492	Elongation Factor G, domain III	448	521	5.6E-30	IPR041095
SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	523	645	4.8E-37	IPR020568
SUPERFAMILY	SSF54980	EF-G C-terminal domain-like	646	739	1.92E-24	IPR035647
SUPERFAMILY	SSF50447	Translation proteins	294	446	5.08E-28	IPR009000
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	52	327	2.51E-98	IPR027417
SUPERFAMILY	SSF54980	EF-G C-terminal domain-like	446	523	3.6E-21	IPR035647
Gene3D	G3DSA:3.30.70.870	Elongation Factor G (Translational Gtpase), domain 3	455	528	2.4E-28	-
Gene3D	G3DSA:3.30.230.10	-	529	733	3.2E-77	IPR014721
Gene3D	G3DSA:2.40.30.10	Translation factors	337	454	1.1E-32	-
Gene3D	G3DSA:3.40.50.300	-	48	333	4.9E-113	IPR027417
Gene3D	G3DSA:3.30.70.240	-	650	720	3.2E-77	-
SMART	SM00838	EFG_C_a	646	733	1.0E-33	IPR000640
SMART	SM00889	EFG_IV_2	524	644	9.6E-55	IPR005517
TIGRFAM	TIGR00231	small_GTP: small GTP-binding protein domain	55	227	7.1E-26	IPR005225
TIGRFAM	TIGR00484	EF-G: translation elongation factor G	51	737	1.3E-281	IPR004540
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	53	330	70.83049	IPR000795
ProSitePatterns	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	99	114	-	IPR031157
PRINTS	PR00315	GTP-binding elongation factor signature	126	136	8.1E-16	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	178	187	8.1E-16	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	142	153	8.1E-16	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	106	114	8.1E-16	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	57	70	8.1E-16	IPR000795
Hamap	MF_00054_B	Elongation factor G [fusA].	51	737	106.520462	IPR004540

Gene Ontology

Biological Process:

GO:0006414 (translational elongation)

Molecular Function:

GO:0003746 (translation elongation factor activity) GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K02355 (elongation factor G)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G45332.1	Translation elongation factor EFG/EF2 protein.
RefSeq	XP_017228453.1	PREDICTED: elongation factor G-2, mitochondrial [Daucus carota subsp. sativus]
Swiss-Prot	Q9C641	Elongation factor G-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MEFG1 PE=1 SV=1
TrEMBL	A0A175YBH8	Elongation factor G, mitochondrial OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031877 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	29.598429	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	22.88859	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.040691	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	21.23958	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	21.81695	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	17.331543	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.287083	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	8.64928	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	44.719025	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	43.397934	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	48.455486	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	44.527893	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	50.368145	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	43.230503	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	10.84834	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.364668	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	16.887074	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	22.048378	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	20.315048	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	35.83717	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	38.2528	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	25.06064	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	31.5259	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	25.939415	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	27.211622	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	32.335106	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	26.94474	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	28.463364	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	32.913597	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.52749		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.920676		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.569014		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	22.875311		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.466278		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	23.569263		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	16.629778		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.334572		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.942554		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	12.953988	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.671326	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.88595	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	22.52285	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	18.195938	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	74.770157	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	50.424927	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	28.722355	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	39.255215	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	40.429085	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	40.350143	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	40.124966	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg1787
Aizoaceae	Mesembryanthemum crystallinum	1	gene_11196
Amaranthaceae	Atriplex hortensis	1	Ah001767
Amaranthaceae	Beta vulgaris	1	BVRB_8g189370
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg40837, Sbi_jg50799
Amaranthaceae	Salicornia europaea	1	Seu_jg2349
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00023352
Amaranthaceae	Suaeda glauca	2	Sgl43481, Sgl48280
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000011059, gene:ENSEOMG00000032789 ... gene:ENSEOMG00000046308
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0012140, CQ.Regalona.r1.8BG0013370
Anacardiaceae	Pistacia vera	1	pistato.v30002230
Apiaceae	Apium graveolens	1	Ag1G00114
Arecaceae	Cocos nucifera	1	COCNU_03G011170
Arecaceae	Phoenix dactylifera	1	gene-LOC103702480
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.1095.V1.1
Asteraceae	Flaveria trinervia	1	Ftri15G31122
Brassicaceae	Arabidopsis thaliana	2	AT1G45332.1, AT2G45030.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10001325m.g.v1.0, Thhalv10028174m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp4g27090.v2.2
Brassicaceae	Brassica nigra	1	BniB06g003460.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1101
Casuarinaceae	Casuarina glauca	1	Cgl05G1122
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g13530
Dunaliellaceae	Dunaliella salina	2	Dusal.0369s00012.v1.0, Dusal.0369s00013.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g18790
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.119
Plantaginaceae	Plantago ovata	1	Pov_00014964
Plumbaginaceae	Limonium bicolor	2	Lb3G19610, Lb3G19611
Poaceae	Echinochloa crus-galli	4	AH09.472, BH09.516, CH05.3094, CH09.566
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0524730, gene-QOZ80_6BG0478400
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0712610.1
Poaceae	Lolium multiflorum	1	gene-QYE76_033777
Poaceae	Oryza coarctata	1	Oco05G017020
Poaceae	Oryza sativa	2	LOC_Os03g36780.1, LOC_Os03g37110.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G144800, gene-BS78_04G134200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0400058, Pt_Chr0400064
Poaceae	Sporobolus alterniflorus	2	Chr14G008040, Chr21G008200
Poaceae	Thinopyrum elongatum	1	Tel7E01G591700
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG046900, gene_TRIDC7BG040830
Poaceae	Triticum aestivum	3	TraesCS7A02G336600.4, TraesCS7B02G248200.1 ... TraesCS7D02G344300.4
Poaceae	Zea mays	1	Zm00001eb064310_P002
Poaceae	Zoysia japonica	2	nbis-gene-31756, nbis-gene-55081
Poaceae	Zoysia macrostachya	1	Zma_g31999
Portulacaceae	Portulaca oleracea	2	evm.TU.LG13.1149, evm.TU.LG21.786
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g11250
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_9_RagTag.1240
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-20932
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-8691
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21225
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000003l.767
Rhizophoraceae	Kandelia obovata	1	Maker00009646
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-1288
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-4836
Salicaceae	Populus euphratica	2	populus_peu03370, populus_peu34219
Solanaceae	Lycium barbarum	1	gene-LOC132645763
Solanaceae	Solanum chilense	1	SOLCI001542200
Solanaceae	Solanum pennellii	1	gene-LOC107006383
Tamaricaceae	Reaumuria soongarica	1	gene_12681
Tamaricaceae	Tamarix chinensis	1	TC05G0708
Zosteraceae	Zostera marina	1	Zosma04g08770.v3.1