halophFGD

Basic Information

Locus ID: Ag1G00103

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: BEST Arabidopsis thaliana protein match is

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	7300482	7302055	+	Ag1G00103

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.59	13,946.42 Da	77.54	38.55	-0.96

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	57	115	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	57	86	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	87	101	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT3G60520.1
RefSeq	XP_017228435.1	PREDICTED: uncharacterized protein LOC108192681 [Daucus carota subsp. sativus]
TrEMBL	A0A175YAM5	Zinc ion-binding protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031871 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.79002	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	17.14382	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.257313	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.342216	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.736534	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.604115	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	19.973612	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	17.741413	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	16.6968	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	12.272044	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	13.674877	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	13.386526	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.753098	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	14.569578	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.90345	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.234346	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.523875	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.11825	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.541177	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.780919	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.273274	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.995238	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.536589	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.883974	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.054992	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	3.791935	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.440763	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.986926	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.841594	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	17.624687		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.418396		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.533161		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	20.900595		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	38.35944		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	28.803194		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	17.704651		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	15.07703		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	16.56226		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.180342	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	18.901812	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.68487	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	38.410053	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	35.172375	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	31.116726	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	32.126598	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	37.699913	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	32.751293	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	50.998428	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	86.443672	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	112.142242	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11019, jg1792, jg1793, jg29205, jg29705
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1316, gene_1473
Amaranthaceae	Atriplex hortensis	2	Ah023262, Ah023748
Amaranthaceae	Beta vulgaris	1	BVRB_1g008150
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg29222, Sbi_jg3459, Sbi_jg4151, Sbi_jg49656
Amaranthaceae	Salicornia europaea	2	Seu_jg5604, Seu_jg6505
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000212, GOSA_00001008
Amaranthaceae	Suaeda glauca	3	Sgl10547, Sgl11356, Sgl16741
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013018, gene:ENSEOMG00000014117 ... gene:ENSEOMG00000034726, gene:ENSEOMG00000035407, gene:ENSEOMG00000046445, gene:ENSEOMG00000048540
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0007050, CQ.Regalona.r1.1AG0010950 ... CQ.Regalona.r1.1BG0014920, CQ.Regalona.r1.2BG0022750
Anacardiaceae	Pistacia vera	2	pistato.v30002300, pistato.v30041640
Apiaceae	Apium graveolens	2	Ag1G00103, Ag5G01159
Arecaceae	Cocos nucifera	6	COCNU_03G007340, COCNU_06G018220, COCNU_07G005590 ... COCNU_07G005600, COCNU_10G003820, COCNU_13G003700
Arecaceae	Phoenix dactylifera	3	gene-LOC103711006, gene-LOC103716548, gene-LOC103723726
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3571.V1.1, AsparagusV1_08.2361.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G24730, Ftri3G28602, Ftri5G26837, Ftri7G29390 ... Ftri9G26886
Brassicaceae	Arabidopsis thaliana	2	AT1G02070.1, AT3G60520.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006310m.g.v1.0, Thhalv10009084m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g00230.v2.2, Sp2g24365.v2.2, Sp5g02700.v2.2
Brassicaceae	Brassica nigra	3	BniB02g000880.2N, BniB06g053570.2N, BniB08g074900.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1230, Ceq05G1108
Casuarinaceae	Casuarina glauca	1	Cgl03G1335
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g08340, gene.Cymno03g07020
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g04800, gene.Thate05g27060, gene.Thate09g03130
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2081, nbisL1-mrna-6086
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.126, evm.TU.LG06.1559
Plumbaginaceae	Limonium bicolor	3	Lb5G28843, Lb6G30192, Lb6G31412
Poaceae	Echinochloa crus-galli	16	AH01.4721, AH07.2287, AH07.2874, AH09.1171, AH09.1836 ... BH07.2692, BH07.3933, BH07.3936, BH09.1272, BH09.2009, CH01.5297, CH07.2176, CH07.2763, CH09.1383, CH09.2159, Contig181.144
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0134780, gene-QOZ80_2AG0139790 ... gene-QOZ80_2BG0190270, gene-QOZ80_2BG0195450, gene-QOZ80_3AG0236570, gene-QOZ80_3BG0291470, gene-QOZ80_4AG0308230, gene-QOZ80_4AG0315770, gene-QOZ80_4BG0339240, gene-QOZ80_4BG0346760
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0172080.1, HORVU.MOREX.r3.2HG0189600.1 ... HORVU.MOREX.r3.6HG0600930.1
Poaceae	Lolium multiflorum	1	gene-QYE76_018209
Poaceae	Oryza coarctata	9	Oco03G017220, Oco04G013180, Oco04G017970, Oco05G004890 ... Oco06G005010, Oco07G007150, Oco07G012430, Oco08G007060, Oco08G012160
Poaceae	Oryza sativa	5	LOC_Os02g36000.1, LOC_Os02g44090.1, LOC_Os03g08840.1 ... LOC_Os04g37700.1, LOC_Os04g46600.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G455400, gene-BS78_04G170400 ... gene-BS78_04G218800, gene-BS78_06G114800, gene-BS78_06G181500
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0101404, Pt_Chr0107709, Pt_Chr0301769, Pt_Chr0301780 ... Pt_Chr0302557, Pt_Chr0504742
Poaceae	Sporobolus alterniflorus	14	Chr04G002490, Chr06G005830, Chr07G008750, Chr09G013710 ... Chr09G024290, Chr12G013570, Chr13G009560, Chr15G007450, Chr23G011870, Chr25G005890, Chr25G007840, Chr26G007650, Chr30G005710, Chr30G007740
Poaceae	Thinopyrum elongatum	4	Tel2E01G558700, Tel2E01G705500, Tel4E01G505200 ... Tel6E01G468100
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG046170, gene_TRIDC2AG059720 ... gene_TRIDC2BG049120, gene_TRIDC4AG000180, gene_TRIDC4BG051640, gene_TRIDC6AG038530, gene_TRIDC6BG045430
Poaceae	Triticum aestivum	12	TraesCS2A02G317800.1, TraesCS2A02G413800.1 ... TraesCS2B02G335800.1, TraesCS2B02G432600.1, TraesCS2D02G315500.1, TraesCS2D02G410800.1, TraesCS4A02G001900.1, TraesCS4B02G303200.1, TraesCS4D02G301700.1, TraesCS6A02G250100.1, TraesCS6B02G275300.1, TraesCS6D02G231900.1
Poaceae	Zea mays	10	Zm00001eb006590_P001, Zm00001eb074720_P001 ... Zm00001eb081390_P001, Zm00001eb186590_P001, Zm00001eb244610_P001, Zm00001eb244620_P001, Zm00001eb249520_P001, Zm00001eb401520_P001, Zm00001eb423710_P001, Zm00001eb429690_P001
Poaceae	Zoysia japonica	7	nbis-gene-22366, nbis-gene-37281, nbis-gene-37717 ... nbis-gene-4267, nbis-gene-58667, nbis-gene-7539, nbis-gene-9264
Poaceae	Zoysia macrostachya	7	Zma_g13736, Zma_g14051, Zma_g16813, Zma_g19795, Zma_g20192 ... Zma_g21367, Zma_g4270
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1870, evm.TU.LG06.486, evm.TU.LG19.735 ... evm.TU.LG24.725
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g19030, gene.Posoc04g17510, gene.Posoc07g04560
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_7_RagTag.214, evm.TU.Scaffold_7_RagTag.940 ... evm.TU.Scaffold_8_RagTag.802
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-18950, nbisL1-mrna-19504, nbisL1-mrna-8323 ... nbisL1-mrna-8401, nbisL1-mrna-9438
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12704, nbisL1-mrna-13797
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15160, nbisL1-mrna-6773, nbisL1-mrna-7075
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.720, evm.TU.utg000018l.112 ... evm.TU.utg000018l.484, evm.TU.utg000028l.123
Rhizophoraceae	Kandelia obovata	3	Maker00002777, Maker00002791, Maker00010565
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11513, nbisL1-mrna-13044, nbisL1-mrna-20499 ... nbisL1-mrna-8085
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10185, nbisL1-mrna-22757, nbisL1-mrna-9767
Salicaceae	Populus euphratica	3	populus_peu12025, populus_peu18066, populus_peu31831
Solanaceae	Lycium barbarum	4	gene-LOC132602509, gene-LOC132627599, gene-LOC132634783 ... gene-LOC132645758
Solanaceae	Solanum chilense	3	SOLCI001541700, SOLCI002945500, SOLCI004763700
Solanaceae	Solanum pennellii	3	gene-LOC107001836, gene-LOC107015013, gene-LOC107015982
Tamaricaceae	Reaumuria soongarica	2	STRG.8395_chr06_+, gene_1531
Tamaricaceae	Tamarix chinensis	2	TC03G2599, TC09G2535
Zosteraceae	Zostera marina	4	Zosma01g07290.v3.1, Zosma02g05750.v3.1, Zosma06g03820.v3.1 ... Zosma06g19980.v3.1