halophFGD

Basic Information

Locus ID: Ag1G00087

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: SPX3

Description: SPX domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	5328257	5329916	-	Ag1G00087

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.17	29,669.95 Da	56.41	82.27	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14481	SPX_AtSPX1_like	2	143	9.53042E-71	-
Pfam	PF03105	SPX domain	1	36	6.7E-7	IPR004331
Pfam	PF03105	SPX domain	96	155	6.4E-10	IPR004331
ProSiteProfiles	PS51382	SPX domain profile.	1	154	25.544754	IPR004331

Best hit

Source	Best Hit ID	Description
TAIR	AT2G45130.1	SPX domain gene 3.
RefSeq	XP_030962367.1	SPX domain-containing protein 3-like [Quercus lobata]
Swiss-Prot	Q5PP62	SPX domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPX3 PE=2 SV=1
TrEMBL	A0A8J4R6B7	SPX domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_014084 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	11.426873	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	7.516943	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	10.146977	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.254692	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.556955	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	4.528527	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	14.046701	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.92411	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.717899	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.142733	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.06865	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.027171	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	11.303448	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	10.758092	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.427001	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.965496	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.290197	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.132513	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.288736	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.145107	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.181037	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.257482	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.157137	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.041694		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.463424		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.35007		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.10824		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.571052		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.114714		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	16.152693		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.251879		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	11.929435		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.179806	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.702787	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.369094	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.326897	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	13.731088	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.11561	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.767029	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg1807, jg19778, jg26804, jg26810, jg31624, jg40243, jg4615
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10628, gene_17870, gene_24638
Amaranthaceae	Atriplex hortensis	4	Ah014346, Ah023211, Ah032813, Ah034692
Amaranthaceae	Beta vulgaris	4	BVRB_2g030200, BVRB_2g040290, BVRB_2g040330, BVRB_8g194430
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg21595, Sbi_jg21596, Sbi_jg22225, Sbi_jg29246 ... Sbi_jg29726, Sbi_jg3485, Sbi_jg40704, Sbi_jg43246, Sbi_jg50711
Amaranthaceae	Salicornia europaea	4	Seu_jg16149, Seu_jg18652, Seu_jg2265, Seu_jg6478
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00000237, GOSA_00004399, GOSA_00007962, GOSA_00008753
Amaranthaceae	Suaeda glauca	9	Sgl11336, Sgl16725, Sgl42039, Sgl46815, Sgl62697, Sgl66461 ... Sgl67258, Sgl67318, Sgl70785
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000012025, gene:ENSEOMG00000013004 ... gene:ENSEOMG00000014340, gene:ENSEOMG00000017603, gene:ENSEOMG00000018317, gene:ENSEOMG00000018792, gene:ENSEOMG00000033603, gene:ENSEOMG00000033674, gene:ENSEOMG00000048000, gene:ENSEOMG00000048014, gene:ENSEOMG00000049114
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0006580, CQ.Regalona.r1.1BG0021300 ... CQ.Regalona.r1.2AG0006570, CQ.Regalona.r1.2AG0022880, CQ.Regalona.r1.2BG0006790, CQ.Regalona.r1.2BG0022880, CQ.Regalona.r1.8AG0021950, CQ.Regalona.r1.8BG0020520
Anacardiaceae	Pistacia vera	4	pistato.v30002460, pistato.v30128120, pistato.v30249980 ... pistato.v30255160
Apiaceae	Apium graveolens	4	Ag1G00087, Ag2G02837, Ag3G02760, Ag4G00916
Arecaceae	Cocos nucifera	5	COCNU_03G016860, COCNU_13G001870, contig69552339G000010 ... scaffold005863G000020, scaffold012478G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103708749, gene-LOC103713471, gene-LOC103716313 ... gene-LOC103717836
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.2475.V1.1, AsparagusV1_02.2293.V1.1 ... AsparagusV1_03.1321.V1.1, AsparagusV1_04.3061.V1.1, AsparagusV1_06.1018.V1.1, AsparagusV1_06.1747.V1.1, AsparagusV1_08.2452.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G30672, Ftri13G30499, Ftri14G01702, Ftri18G06814 ... Ftri7G02724, Ftri7G15454, Ftri8G23876
Brassicaceae	Arabidopsis thaliana	4	AT2G26660.1, AT2G45130.1, AT5G15330.1, AT5G20150.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10014185m.g.v1.0, Thhalv10014356m.g.v1.0 ... Thhalv10016985m.g.v1.0, Thhalv10023655m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g09230.v2.2, Sp4g27190.v2.2, Sp6g24260.v2.2 ... Sp6g28730.v2.2
Brassicaceae	Brassica nigra	6	BniB01g001650.2N, BniB02g047500.2N, BniB05g043300.2N ... BniB08g010290.2N, BniB08g029390.2N, BniB08g032540.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G2335, Ceq05G1139, Ceq06G0628, Ceq08G0308
Casuarinaceae	Casuarina glauca	4	Cgl04G2540, Cgl05G1149, Cgl06G0647, Cgl08G0257
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g10110, gene.Cymno02g04110, gene.Cymno09g08860 ... gene.Cymno11g01780
Dunaliellaceae	Dunaliella salina	2	Dusal.0039s00001.v1.0, Dusal.1114s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g27280, gene.Thate03g00580, gene.Thate03g20620 ... gene.Thate03g26490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-90
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.221, evm.TU.LG02.222, evm.TU.LG07.1442 ... evm.TU.LG07.958, evm.TU.LG07.959
Plantaginaceae	Plantago ovata	5	Pov_00005495, Pov_00013316, Pov_00014950, Pov_00028003 ... Pov_00032606
Plumbaginaceae	Limonium bicolor	6	Lb1G03875, Lb2G10812, Lb2G12673, Lb2G12679, Lb2G13081 ... Lb2G13084
Poaceae	Echinochloa crus-galli	19	AH01.2302, AH01.3348, AH01.450, AH02.1965, AH06.2227 ... AH07.756, BH01.2590, BH01.2618, BH01.291, BH01.3716, BH02.2018, BH06.2007, BH07.885, CH01.131, CH01.2615, CH01.3928, CH02.2182, CH06.2251, CH07.643
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_1AG0020220, gene-QOZ80_1BG0070120 ... gene-QOZ80_2AG0105430, gene-QOZ80_2AG0123510, gene-QOZ80_2BG0158890, gene-QOZ80_2BG0178380, gene-QOZ80_3AG0209850, gene-QOZ80_3AG0251740, gene-QOZ80_3BG0255040, gene-QOZ80_3BG0276340, gene-QOZ80_6AG0544400, gene-QOZ80_6BG0497920
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0125510.1, HORVU.MOREX.r3.5HG0528310.1 ... HORVU.MOREX.r3.4HG0396980.1.CDS1, HORVU.MOREX.r3.7HG0719650.1, HORVU.MOREX.r3.7HG0750980.1
Poaceae	Lolium multiflorum	8	gene-QYE76_011168, gene-QYE76_016747, gene-QYE76_021397 ... gene-QYE76_034961, gene-QYE76_039718, gene-QYE76_039733, gene-QYE76_060550, gene-QYE76_067384
Poaceae	Oryza coarctata	11	Oco03G004580, Oco04G005310, Oco05G015610, Oco05G027860 ... Oco06G016130, Oco06G028840, Oco11G012350, Oco12G012530, Oco14G013310, Oco19G003440, Oco20G003480
Poaceae	Oryza sativa	5	LOC_Os02g10780.1, LOC_Os03g29250.1, LOC_Os03g61200.1 ... LOC_Os06g40120.1, LOC_Os10g25310.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G024900, gene-BS78_01G327300, gene-BS78_K056600 ... gene-BS78_03G167500, gene-BS78_04G078200, gene-BS78_10G184700, gene-BS78_K246600
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0105894, Pt_Chr0202080, Pt_Chr0202090, Pt_Chr0306264 ... Pt_Chr0306277, Pt_Chr0400644, Pt_Chr0400666
Poaceae	Sporobolus alterniflorus	17	Chr01G024430, Chr02G018170, Chr02G029830, Chr03G008110 ... Chr04G013100, Chr04G019150, Chr04G031820, Chr05G007500, Chr06G014670, Chr07G012560, Chr07G030850, Chr08G008900, Chr0G008070, Chr0G021840, Chr10G017600, Chr12G032770, Chr20G005320
Poaceae	Thinopyrum elongatum	6	Tel2E01G332800, Tel5E01G779900, Tel7E01G637900 ... Tel7E01G973300, Tel7E01G973600, Tel7E01G977000
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG021510, gene_TRIDC2BG025490 ... gene_TRIDC4AG054760, gene_TRIDC4AG065630, gene_TRIDC5BG075370, gene_TRIDC7AG052540, gene_TRIDC7BG044970
Poaceae	Triticum aestivum	16	TraesCS2A02G169600.1, TraesCS2B02G195900.1 ... TraesCS2D02G177100.1, TraesCS4A02G367200.1, TraesCS5B02G505400.1, TraesCS5D02G506200.1, TraesCS7A02G376200.1, TraesCS7A02G554000.1, TraesCS7A02G554100.1, TraesCS7A02G554800.1, TraesCS7B02G277700.1, TraesCS7B02G478000.1, TraesCS7D02G372600.1, TraesCS7D02G541100.1, TraesCS7D02G541600.1, TraesCSU02G094800.1
Poaceae	Zea mays	4	Zm00001eb048730_P001, Zm00001eb063280_P003 ... Zm00001eb162710_P001, Zm00001eb386270_P001
Poaceae	Zoysia japonica	9	nbis-gene-12115, nbis-gene-15553, nbis-gene-15554 ... nbis-gene-21396, nbis-gene-33446, nbis-gene-41066, nbis-gene-44051, nbis-gene-46689, nbis-gene-53100
Poaceae	Zoysia macrostachya	8	Zma_g1030, Zma_g10496, Zma_g129, Zma_g15153, Zma_g15987 ... Zma_g2452, Zma_g33034, Zma_g8019
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1979, evm.TU.LG19.749, evm.TU.LG23.237 ... evm.TU.LG24.740
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g08440, gene.Posoc03g19780, gene.Posoc03g21020 ... gene.Posoc04g02980, gene.Posoc09g12650
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.41, evm.TU.Scaffold_3_RagTag.1753 ... evm.TU.Scaffold_4_RagTag.2314, evm.TU.Scaffold_7_RagTag.202
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12858, nbisL1-mrna-19519, nbisL1-mrna-28085
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10505, nbisL1-mrna-10552, nbisL1-mrna-18369 ... nbisL1-mrna-21322
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16480, nbisL1-mrna-2946, nbisL1-mrna-5057 ... nbisL1-mrna-7086
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000008l.1361, evm.TU.utg000019l.164 ... evm.TU.utg000028l.117, evm.TU.utg000033l.24
Rhizophoraceae	Kandelia obovata	4	Maker00001001, Maker00002243, Maker00010465, Maker00014921
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-12143, nbisL1-mrna-16748, nbisL1-mrna-1820 ... nbisL1-mrna-8077
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14445, nbisL1-mrna-18263, nbisL1-mrna-22345 ... nbisL1-mrna-9757
Salicaceae	Populus euphratica	6	populus_peu00666, populus_peu04767, populus_peu05773 ... populus_peu11140, populus_peu12890, populus_peu31818
Solanaceae	Lycium barbarum	6	gene-LOC132600039, gene-LOC132606075, gene-LOC132621605 ... gene-LOC132635903, gene-LOC132636216, gene-LOC132636957
Solanaceae	Solanum chilense	3	SOLCI002968300, SOLCI003751600, SOLCI003851900
Solanaceae	Solanum pennellii	5	gene-LOC107005465, gene-LOC107008693, gene-LOC107009225 ... gene-LOC107027032, gene-LOC107030280
Tamaricaceae	Reaumuria soongarica	4	STRG.12113_chr02_-, STRG.602_chr01_-, gene_1521, gene_17260
Tamaricaceae	Tamarix chinensis	4	TC01G1269, TC01G1525, TC03G2625, TC10G1332
Zosteraceae	Zostera marina	3	Zosma01g07730.v3.1, Zosma01g17060.v3.1, Zosma05g32320.v3.1