halophFGD

Basic Information

Locus ID: Ag1G00062

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the peptidase C19 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	4301669	4313524	-	Ag1G00062

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.60	104,962.76 Da	44.95	84.98	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02674	Peptidase_C19R	763	917	2.51014E-59	-
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	320	916	1.8E-85	IPR001394
Pfam	PF06337	DUSP domain	44	144	4.2E-21	IPR006615
SUPERFAMILY	SSF143791	DUSP-like	21	144	7.32E-25	IPR035927
SUPERFAMILY	SSF54001	Cysteine proteinases	317	919	4.91E-113	IPR038765
Gene3D	G3DSA:3.10.20.90	-	157	244	1.3E-10	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	659	925	1.6E-57	-
Gene3D	G3DSA:3.30.2230.10	-	11	156	7.4E-31	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	308	511	5.7E-68	-
SMART	SM00695	dusp	39	147	3.4E-23	IPR006615
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	319	919	58.557236	IPR028889
ProSiteProfiles	PS51283	DUSP domain profile.	22	144	17.775686	IPR006615
ProSitePatterns	PS00973	Ubiquitin specific protease (USP) domain signature 2.	861	878	-	IPR018200
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	320	335	-	IPR018200
MobiDBLite	mobidb-lite	consensus disorder prediction	662	693	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	662	684	-	-

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity)

KEGG Pathway

KO Term:

K11839 (ubiquitin carboxyl-terminal hydrolase 8 [EC:3.4.19.12])

Pathway:

ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G10570.1	ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9.
RefSeq	XP_017226634.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZSB5	Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2
TrEMBL	A0A175YFB8	Ubiquitin carboxyl-terminal hydrolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029901 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	35.064056	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	26.276711	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	28.667234	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	28.902903	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	30.209955	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.729706	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	25.150677	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	20.068651	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	38.723507	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	37.667915	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	38.908524	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	36.312115	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	34.721573	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	29.442806	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	20.532671	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	22.4666	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	18.709902	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	24.363123	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	16.906507	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	28.730251	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	26.131817	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	24.990276	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	22.721579	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	23.059139	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	19.361702	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	27.303909	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	21.118591	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	17.141764	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	22.583269	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.172894		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.480423		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.036326		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	20.634987		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.963212		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	19.965858		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.486145		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.059368		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.502666		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	20.214113	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	12.709983	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.670015	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	35.600876	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	23.726229	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.762115	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.957869	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	32.517208	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	18.757841	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.650606	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.917084	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.81955	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg15180, jg16749, jg22501, jg36058, jg37396, jg8098
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14623, gene_15266, gene_6869, gene_692
Amaranthaceae	Atriplex hortensis	3	Ah004001, Ah016422, Ah027748
Amaranthaceae	Beta vulgaris	4	BVRB_1g013070, BVRB_5g104230, BVRB_5g108750, BVRB_7g171320
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg1453, Sbi_jg15770, Sbi_jg15771, Sbi_jg24154 ... Sbi_jg35107, Sbi_jg40688, Sbi_jg50692, Sbi_jg7995
Amaranthaceae	Salicornia europaea	4	Seu_jg12044, Seu_jg13783, Seu_jg2252, Seu_jg3283
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003451, GOSA_00010746, GOSA_00026351
Amaranthaceae	Suaeda glauca	8	Sgl44166, Sgl48935, Sgl51333, Sgl52363, Sgl56578, Sgl57655 ... Sgl72711, Sgl76250
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000005045, gene:ENSEOMG00000005973 ... gene:ENSEOMG00000007359, gene:ENSEOMG00000011887, gene:ENSEOMG00000022340, gene:ENSEOMG00000023048, gene:ENSEOMG00000023227, gene:ENSEOMG00000023536, gene:ENSEOMG00000024167, gene:ENSEOMG00000034902, gene:ENSEOMG00000036939, gene:ENSEOMG00000039874, gene:ENSEOMG00000047171
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.5AG0011380, CQ.Regalona.r1.5BG0005110 ... CQ.Regalona.r1.5BG0011820, CQ.Regalona.r1.7AG0005280, CQ.Regalona.r1.8AG0012430, CQ.Regalona.r1.9BG0000540
Anacardiaceae	Pistacia vera	4	pistato.v30055480, pistato.v30074910, pistato.v30133200 ... pistato.v30276840
Apiaceae	Apium graveolens	7	Ag11G04399, Ag1G00062, Ag2G01212, Ag2G01608, Ag3G00677 ... Ag6G02210, AgUnG00997
Arecaceae	Cocos nucifera	4	COCNU_03G000200, COCNU_10G009170, COCNU_15G004400 ... scaffold007358G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103707607, gene-LOC103710820, gene-LOC103714421 ... gene-LOC103714957, gene-LOC103722919, gene-LOC120103833
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.433.V1.1, AsparagusV1_05.1652.V1.1 ... AsparagusV1_10.135.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G20462, Ftri13G16792, Ftri15G02660, Ftri16G01695 ... Ftri2G16266, Ftri6G05228
Brassicaceae	Arabidopsis thaliana	5	AT1G32850.1, AT2G40930.1, AT4G10570.1, AT4G10590.2 ... AT5G22030.2
Brassicaceae	Eutrema salsugineum	5	Thhalv10006750m.g.v1.0, Thhalv10012650m.g.v1.0 ... Thhalv10016401m.g.v1.0, Thhalv10027354m.g.v1.0, Thhalv10028406m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g28150.v2.2, Sp4g23240.v2.2, Sp6g06860.v2.2 ... Sp6g23160.v2.2
Brassicaceae	Brassica nigra	9	BniB01g004480.2N, BniB01g008660.2N, BniB02g041530.2N ... BniB03g035870.2N, BniB04g049530.2N, BniB05g058320.2N, BniB08g010970.2N, BniB08g035970.2N, BniB08g052090.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0661, Ceq04G0858, Ceq04G1239, Ceq05G1541
Casuarinaceae	Casuarina glauca	8	Cgl03G0751, Cgl04G0962, Cgl04G0963, Cgl04G0964, Cgl04G0965 ... Cgl04G0974, Cgl04G1402, Cgl05G1543
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g00060, gene.Cymno08g02970, gene.Cymno10g04770
Dunaliellaceae	Dunaliella salina	1	Dusal.0299s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g29410, gene.Thate04g05110, gene.Thate04g21560
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1884, evm.TU.LG01.2662, evm.TU.LG09.547 ... evm.TU.LG10.1627
Plantaginaceae	Plantago ovata	4	Pov_00003074, Pov_00003619, Pov_00025505, Pov_00026576
Plumbaginaceae	Limonium bicolor	10	Lb1G02466, Lb2G10344, Lb2G13622, Lb2G15163, Lb3G20268 ... Lb4G23140, Lb5G28584, Lb5G28851, Lb5G28853, Lb6G29807
Poaceae	Echinochloa crus-galli	12	AH01.2506, AH03.279, AH04.1234, AH05.4108, BH01.2837 ... BH03.357, BH04.1208, BH05.4206, CH01.3043, CH03.429, CH04.1384, CH05.4432
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0120360, gene-QOZ80_2BG0174840 ... gene-QOZ80_2BG0174850, gene-QOZ80_5AG0398500, gene-QOZ80_5BG0447120, gene-QOZ80_7AG0556150, gene-QOZ80_7BG0587090, gene-QOZ80_9AG0680900, gene-QOZ80_9BG0707130, gene-QOZ80_UnG0728540
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0035690.2, HORVU.MOREX.r3.2HG0152430.1 ... HORVU.MOREX.r3.4HG0365930.1, HORVU.MOREX.r3.5HG0425920.1
Poaceae	Lolium multiflorum	6	gene-QYE76_001172, gene-QYE76_008273, gene-QYE76_010796 ... gene-QYE76_010860, gene-QYE76_042572, gene-QYE76_067043
Poaceae	Oryza coarctata	8	Oco13G001710, Oco14G001850, Oco19G001010, Oco20G001150 ... Oco21G005460, Oco22G006480, Oco23G010770, Oco24G010570
Poaceae	Oryza sativa	7	LOC_Os01g48600.1, LOC_Os07g06610.1, LOC_Os09g17480.1 ... LOC_Os10g07270.1, LOC_Os11g28360.1, LOC_Os11g28365.1, LOC_Os12g42600.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G039200, gene-BS78_05G127000, gene-BS78_K096800 ... gene-BS78_08G153700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0303555, Pt_Chr0303561, Pt_Chr0501276, Pt_Chr0704572 ... Pt_Chr0704933
Poaceae	Sporobolus alterniflorus	10	Chr06G020260, Chr07G017790, Chr09G006910, Chr0G004600 ... Chr13G017510, Chr13G017540, Chr19G007370, Chr19G017700, Chr27G009360, Chr31G004590
Poaceae	Thinopyrum elongatum	4	Tel1E01G240800, Tel2E01G460100, Tel4E01G276700 ... Tel5E01G066200
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG020490, gene_TRIDC1BG024290 ... gene_TRIDC2AG033710, gene_TRIDC2BG038310, gene_TRIDC4AG019950, gene_TRIDC4BG023930, gene_TRIDC5AG004000, gene_TRIDC5BG004140
Poaceae	Triticum aestivum	12	TraesCS1A02G137800.3, TraesCS1B02G149400.2 ... TraesCS1D02G132600.2, TraesCS2A02G248500.1, TraesCS2B02G268700.1, TraesCS2D02G250200.1, TraesCS4A02G139900.1, TraesCS4B02G148000.4, TraesCS4D02G153200.3, TraesCS5A02G027000.1, TraesCS5B02G026200.1, TraesCS5D02G034700.1
Poaceae	Zea mays	4	Zm00001eb026810_P002, Zm00001eb090590_P003 ... Zm00001eb134530_P002, Zm00001eb300350_P001
Poaceae	Zoysia japonica	3	nbis-gene-35742, nbis-gene-42352, nbis-gene-44472
Poaceae	Zoysia macrostachya	4	Zma_g15860, Zma_g17881, Zma_g25364, Zma_g4759
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.870, evm.TU.LG04.2760, evm.TU.LG04.3200 ... evm.TU.LG08.423, evm.TU.LG16.404, evm.TU.LG19.1110, evm.TU.LG23.144, evm.TU.LG24.1111
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g00190, gene.Posoc05g04310, gene.Posoc06g08640
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_13_RagTag.560, evm.TU.Scaffold_16_RagTag.22 ... evm.TU.Scaffold_1_RagTag.1317, evm.TU.Scaffold_2_RagTag.1072, evm.TU.Scaffold_2_RagTag.1073, evm.TU.Scaffold_8_RagTag.213
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10111, nbisL1-mrna-10113, nbisL1-mrna-22236 ... nbisL1-mrna-22269, nbisL1-mrna-30510, nbisL1-mrna-4114
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11243, nbisL1-mrna-13319, nbisL1-mrna-17327 ... nbisL1-mrna-18149, nbisL1-mrna-19322
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10174, nbisL1-mrna-15946, nbisL1-mrna-17840 ... nbisL1-mrna-20455, nbisL1-mrna-4126
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000009l.604, evm.TU.utg000015l.297 ... evm.TU.utg000016l.389, evm.TU.utg000018l.857, evm.TU.utg000022l.483
Rhizophoraceae	Kandelia obovata	3	Maker00003014, Maker00015233, Maker00017169
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12514, nbisL1-mrna-3149, nbisL1-mrna-3626 ... nbisL1-mrna-4215, nbisL1-mrna-7559, nbisL1-mrna-7560
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11389, nbisL1-mrna-13494, nbisL1-mrna-15234 ... nbisL1-mrna-5682, nbisL1-mrna-6822
Salicaceae	Populus euphratica	7	populus_peu00224, populus_peu02478, populus_peu10782 ... populus_peu12390, populus_peu17229, populus_peu25987, populus_peu26318
Solanaceae	Lycium barbarum	4	gene-LOC132603622, gene-LOC132603822, gene-LOC132631635 ... gene-LOC132634695
Solanaceae	Solanum chilense	3	SOLCI000958500, SOLCI001556500, SOLCI003648000
Solanaceae	Solanum pennellii	3	gene-LOC107023873, gene-LOC107027916, gene-LOC107031377
Tamaricaceae	Reaumuria soongarica	5	gene_11654, gene_13537, gene_15447, gene_15448, gene_3657
Tamaricaceae	Tamarix chinensis	5	TC01G4483, TC06G0156, TC06G1181, TC09G0663, TC11G1297
Zosteraceae	Zostera marina	3	Zosma03g27640.v3.1, Zosma04g00580.v3.1, Zosma04g01490.v3.1