Basic Information
Locus ID:
Ag1G00054
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Signal recognition particle receptor subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3938507 | 3944372 | - | Ag1G00054 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 32,606.38 Da | 29.17 | 99.00 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04105 | SR_beta | 86 | 286 | 1.63517E-63 | IPR019009 |
| Pfam | PF09439 | Signal recognition particle receptor beta subunit | 84 | 264 | 5.9E-36 | IPR019009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 88 | 235 | 6.95E-24 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 80 | 286 | 5.6E-60 | IPR027417 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 87 | 225 | 3.7E-12 | IPR005225 |
| ProSiteProfiles | PS51417 | small GTPase Arf family profile. | 79 | 289 | 8.759293 | - |
| Coils | Coil | Coil | 220 | 240 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05670.1 | signal recognition particle binding. | 0 |
| RefSeq | XP_017243064.1 | PREDICTED: signal recognition particle receptor subunit beta-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166AJJ0 | Signal recognition particle receptor subunit beta OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010112 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 40.684845 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 32.625023 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.14798 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 31.572687 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 35.489487 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 36.106796 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 33.589943 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 26.869783 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 54.682129 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 50.085033 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 55.941284 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 57.771687 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 51.644516 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 53.84911 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 47.517307 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 43.810009 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 55.533363 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 39.275005 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 41.253326 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 39.359943 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.708145 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 59.328487 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 66.057076 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 66.742691 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 54.868431 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.071938 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 39.564735 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 36.601612 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 41.283623 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.205229 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.392954 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.422855 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.37557 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.179501 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.915934 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.734921 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.016671 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.126207 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 41.494194 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.979162 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.737713 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 31.865473 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 39.256413 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 34.957283 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.931103 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 45.877632 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 37.444618 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 58.09911 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 62.25655 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 63.748562 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg7030, jg9479 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19509, gene_3474 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000594 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30549, Sbi_jg58697 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28564 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014931, GOSA_00027077 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55220, Sgl60469 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012318, gene:ENSEOMG00000034490 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013760, CQ.Regalona.r1.8BG0015050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30222060 |
| Apiaceae | Apium graveolens | 1 | Ag1G00054 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G010320, COCNU_10G007860 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696195, gene-LOC103710380 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.298.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G23817 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G18770.1, AT5G05670.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014432m.g.v1.0, Thhalv10022817m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g32260.v2.2, Sp6g37220.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g055030.2N, BniB03g067700.2N, BniB08g002330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1386 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1473 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00120 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0283s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1506 |
| Nitrariaceae | Nitraria sibirica | 6 | evm.TU.LG08.1150, evm.TU.LG08.1151, evm.TU.LG08.1152 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00026425, Pov_00039392 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24062, Lb5G29478, Lb5G29479 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3356, AH08.1376, BH01.3708, BH08.1592, CH01.3941 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0667510.2, HORVU.MOREX.r3.7HG0682460.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030170, gene-QYE76_030179 |
| Poaceae | Oryza coarctata | 2 | Oco15G010520, Oco16G012010 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g27870.1, LOC_Os08g41250.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G033700, gene-BS78_09G126800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403702, Pt_Chr0403707 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G013620, Chr20G006820, Chr29G006500 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G355000, Tel7E01G451000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG024070, gene_TRIDC7AG032990 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G461200.2, TraesCS7A02G193200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042120_P001, Zm00001eb178650_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1710, nbis-gene-4086, nbis-gene-57236 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1283, Zma_g4161 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.949, evm.TU.LG09.1019 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g21320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9892 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2306, nbisL1-mrna-2307 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17980 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.749 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002860 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3253 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11236 |
| Salicaceae | Populus euphratica | 1 | populus_peu33010 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600468, gene-LOC132604540 |
| Solanaceae | Solanum chilense | 2 | SOLCI002514600, SOLCI007417500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004818, gene-LOC107015225 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10436 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2462 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32130.v3.1, Zosma03g04200.v3.1 |